miRNA display CGI


Results 121 - 140 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 29893 0.7 0.283578
Target:  5'- gGCCGGacAGCGUG-UGAuACUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCGCuACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10283 0.7 0.283578
Target:  5'- gCGUCGGCGacaugAGCGCcg-GAugCGCGCc -3'
miRNA:   3'- -GCGGCCGU-----UCGCGcuaCUugGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30370 0.7 0.276637
Target:  5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3'
miRNA:   3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37682 0.7 0.263164
Target:  5'- cCGCCGGauCAGGCGUucguUGAACgCGCGCc -3'
miRNA:   3'- -GCGGCC--GUUCGCGcu--ACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 31612 0.7 0.263164
Target:  5'- uGCCGGU---CGCGAc-GGCCGCGCGg -3'
miRNA:   3'- gCGGCCGuucGCGCUacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42851 0.7 0.261847
Target:  5'- uGCCGGCAccgcccgcugaugacGGCGCc-UGAucgcgucaauggcguGCCGCGCGc -3'
miRNA:   3'- gCGGCCGU---------------UCGCGcuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3208 0.7 0.29787
Target:  5'- aGCCGGCccGGCGCGccgcccgccccgAUGAcGCCGgGCa -3'
miRNA:   3'- gCGGCCGu-UCGCGC------------UACU-UGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 31743 0.7 0.283578
Target:  5'- cCGCCGcCGAGCGaCGc--GGCCGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGC-GCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2308 0.7 0.290655
Target:  5'- gGCCGGCAcGCccGCGuUGAACUG-GCGg -3'
miRNA:   3'- gCGGCCGUuCG--CGCuACUUGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 15404 0.7 0.286392
Target:  5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3'
miRNA:   3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 11515 0.7 0.290655
Target:  5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3'
miRNA:   3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29055 0.7 0.290655
Target:  5'- gGCCGcGC-GGCGCGuccucgGGGCgGCGCGc -3'
miRNA:   3'- gCGGC-CGuUCGCGCua----CUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23134 0.7 0.290655
Target:  5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3'
miRNA:   3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12704 0.71 0.243961
Target:  5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3'
miRNA:   3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20873 0.71 0.25663
Target:  5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3'
miRNA:   3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5'
24116 3' -59.1 NC_005263.2 + 21329 0.71 0.224198
Target:  5'- aCGCCGucggucugauguucGCGAGCGCGcugaAUGAACgUGCGCa -3'
miRNA:   3'- -GCGGC--------------CGUUCGCGC----UACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3308 0.71 0.237217
Target:  5'- gCGCgCGGCGGcGCGCGGUuGAAuuaaacuaucgcuUCGCGCGa -3'
miRNA:   3'- -GCG-GCCGUU-CGCGCUA-CUU-------------GGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.