miRNA display CGI


Results 141 - 160 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 40250 0.71 0.225937
Target:  5'- gGCgGGCAccuggGGCGCGGUGAucuuCCGCccguucGCGg -3'
miRNA:   3'- gCGgCCGU-----UCGCGCUACUu---GGCG------CGC- -5'
24116 3' -59.1 NC_005263.2 + 35419 0.71 0.225937
Target:  5'- aCGCCGGCAAGCucgacGCGAacgacGACCccgGCGCGc -3'
miRNA:   3'- -GCGGCCGUUCG-----CGCUac---UUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27954 0.71 0.225937
Target:  5'- aGCCGGacGGCGCgGAUGGcccagagcuGCUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCG-CUACU---------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 35568 0.71 0.225356
Target:  5'- cCGCCGGCcgcCGCGAacgUGAAugcgaacgccaacCCGCGCGa -3'
miRNA:   3'- -GCGGCCGuucGCGCU---ACUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21906 0.71 0.250229
Target:  5'- gGCCGccGCAucGCGCGGcc-GCCGCGCGg -3'
miRNA:   3'- gCGGC--CGUu-CGCGCUacuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47152 0.71 0.254696
Target:  5'- uGCCGGCAuugcauuccaugcaAGCGCauaGAGCgGCGCa -3'
miRNA:   3'- gCGGCCGU--------------UCGCGcuaCUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29153 0.71 0.254054
Target:  5'- uGCCGGCugcgcucguaaccGGCGCGcucGAgcgcucguGCCGCGCGg -3'
miRNA:   3'- gCGGCCGu------------UCGCGCua-CU--------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1856 0.71 0.25663
Target:  5'- gGCCGGCGAcGUGCGGUucuGgCGCGCc -3'
miRNA:   3'- gCGGCCGUU-CGCGCUAcu-UgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8536 0.71 0.25663
Target:  5'- uCGUCGGCucGGCgGUGAUGAauGCCGCGa- -3'
miRNA:   3'- -GCGGCCGu-UCG-CGCUACU--UGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 47363 0.71 0.25663
Target:  5'- uCGCCgaaaugGGC-GGCGCGuucGAugCGCGCGa -3'
miRNA:   3'- -GCGG------CCGuUCGCGCua-CUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2960 0.71 0.250229
Target:  5'- aGCUGcGCGAGCGUGAUGc-CCGUcaGCGg -3'
miRNA:   3'- gCGGC-CGUUCGCGCUACuuGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12704 0.71 0.243961
Target:  5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3'
miRNA:   3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 3308 0.71 0.237217
Target:  5'- gCGCgCGGCGGcGCGCGGUuGAAuuaaacuaucgcuUCGCGCGa -3'
miRNA:   3'- -GCG-GCCGUU-CGCGCUA-CUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1638 0.71 0.231222
Target:  5'- uCGUCGGC-GGCGUagcccugGAUGcGCUGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCGCG-------CUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19319 0.72 0.214002
Target:  5'- cCGCCGGCu-GUGCGGUGGucgaugucgaaguACuCGCGCc -3'
miRNA:   3'- -GCGGCCGuuCGCGCUACU-------------UG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 44580 0.72 0.209054
Target:  5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19171 0.72 0.203674
Target:  5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3'
miRNA:   3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 689 0.72 0.203674
Target:  5'- uGCuCGGUGAGCGCGAUcguGCCGcCGCc -3'
miRNA:   3'- gCG-GCCGUUCGCGCUAcu-UGGC-GCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.