Results 81 - 100 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 21732 | 0.7 | 0.29787 |
Target: 5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3' miRNA: 3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 3344 | 0.7 | 0.283578 |
Target: 5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3' miRNA: 3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 15404 | 0.7 | 0.286392 |
Target: 5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3' miRNA: 3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 31743 | 0.7 | 0.283578 |
Target: 5'- cCGCCGcCGAGCGaCGc--GGCCGCGCGc -3' miRNA: 3'- -GCGGCcGUUCGC-GCuacUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 2703 | 0.7 | 0.290655 |
Target: 5'- cCGCuCGGCAGGUGC-AUGcGCagCGCGCGu -3' miRNA: 3'- -GCG-GCCGUUCGCGcUACuUG--GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 11515 | 0.7 | 0.290655 |
Target: 5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3' miRNA: 3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 10283 | 0.7 | 0.283578 |
Target: 5'- gCGUCGGCGacaugAGCGCcg-GAugCGCGCc -3' miRNA: 3'- -GCGGCCGU-----UCGCGcuaCUugGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 46700 | 0.7 | 0.290655 |
Target: 5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3' miRNA: 3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30370 | 0.7 | 0.276637 |
Target: 5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3' miRNA: 3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 37682 | 0.7 | 0.263164 |
Target: 5'- cCGCCGGauCAGGCGUucguUGAACgCGCGCc -3' miRNA: 3'- -GCGGCC--GUUCGCGcu--ACUUG-GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 19913 | 0.69 | 0.320345 |
Target: 5'- aCGCCGGCAacGGCauGCaGAaGGcGCCGCGCu -3' miRNA: 3'- -GCGGCCGU--UCG--CG-CUaCU-UGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 42916 | 0.69 | 0.333635 |
Target: 5'- aCGCCGcGCcuGCagGCGAUGuucaaucaggcgcaAACCGCGCu -3' miRNA: 3'- -GCGGC-CGuuCG--CGCUAC--------------UUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30489 | 0.69 | 0.310453 |
Target: 5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3' miRNA: 3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 45119 | 0.69 | 0.339223 |
Target: 5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3' miRNA: 3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 27276 | 0.69 | 0.336021 |
Target: 5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3' miRNA: 3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 17805 | 0.69 | 0.336021 |
Target: 5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3' miRNA: 3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30315 | 0.69 | 0.319576 |
Target: 5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3' miRNA: 3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 9370 | 0.69 | 0.328114 |
Target: 5'- gCGCCGGC-GGCuGCGG-GAAUuucaGCGCGg -3' miRNA: 3'- -GCGGCCGuUCG-CGCUaCUUGg---CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 16581 | 0.69 | 0.320345 |
Target: 5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3' miRNA: 3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 27366 | 0.69 | 0.328114 |
Target: 5'- cCGCCaGCGagcGGCGCGgcGGcgGCCgGCGCGc -3' miRNA: 3'- -GCGGcCGU---UCGCGCuaCU--UGG-CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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