miRNA display CGI


Results 101 - 120 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 17805 0.69 0.336021
Target:  5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3'
miRNA:   3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42916 0.69 0.333635
Target:  5'- aCGCCGcGCcuGCagGCGAUGuucaaucaggcgcaAACCGCGCu -3'
miRNA:   3'- -GCGGC-CGuuCG--CGCUAC--------------UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27366 0.69 0.328114
Target:  5'- cCGCCaGCGagcGGCGCGgcGGcgGCCgGCGCGc -3'
miRNA:   3'- -GCGGcCGU---UCGCGCuaCU--UGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 9370 0.69 0.328114
Target:  5'- gCGCCGGC-GGCuGCGG-GAAUuucaGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCG-CGCUaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16581 0.69 0.320345
Target:  5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3'
miRNA:   3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21638 0.69 0.328114
Target:  5'- gCGCCGGaauGgGCGAauUGggUUGCGCa -3'
miRNA:   3'- -GCGGCCguuCgCGCU--ACuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19043 0.69 0.328114
Target:  5'- gCGCCGuaGCGGGcCGCGucGUGcuauccaaGGCCGCGCGu -3'
miRNA:   3'- -GCGGC--CGUUC-GCGC--UAC--------UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27741 0.69 0.328114
Target:  5'- uGUCGGC--GCGCGAUcAGCCauGCGCGc -3'
miRNA:   3'- gCGGCCGuuCGCGCUAcUUGG--CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30709 0.69 0.336021
Target:  5'- cCGCCcGcCAGGCGCGc--GGCCGCGCc -3'
miRNA:   3'- -GCGGcC-GUUCGCGCuacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8738 0.69 0.305223
Target:  5'- -cUCGGCGAGCGgGGUcGAgacguuuuuaacGCUGCGCGg -3'
miRNA:   3'- gcGGCCGUUCGCgCUA-CU------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20304 0.68 0.369026
Target:  5'- aCGCC-GCGAucacGacgGCGAUGuACCGCGCGa -3'
miRNA:   3'- -GCGGcCGUU----Cg--CGCUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 10879 0.68 0.36057
Target:  5'- -cUCGGCAccGGCGCGcgucGUGAGCgGCGUa -3'
miRNA:   3'- gcGGCCGU--UCGCGC----UACUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 750 0.68 0.383711
Target:  5'- gCGCCGcccauuucggcgacGCGcAGCGCGAUGuacGACUGCGgGu -3'
miRNA:   3'- -GCGGC--------------CGU-UCGCGCUAC---UUGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 23876 0.68 0.377618
Target:  5'- cCGCCgcaaGGCGaagauuucaacGGCGCGcUGAACCaggucGCGCGc -3'
miRNA:   3'- -GCGG----CCGU-----------UCGCGCuACUUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1282 0.68 0.35225
Target:  5'- aGUCGGagcGGCGCGAaaGAUCGCGCu -3'
miRNA:   3'- gCGGCCgu-UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8258 0.68 0.377618
Target:  5'- aGCCGGguAuGCGCGuucgGAcgGCCacaGCGCGa -3'
miRNA:   3'- gCGGCCguU-CGCGCua--CU--UGG---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.