miRNA display CGI


Results 121 - 140 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17320 0.68 0.35225
Target:  5'- cCGCCGaGCAGcagcgcauGCGCGAgGAAgUCGUGCGu -3'
miRNA:   3'- -GCGGC-CGUU--------CGCGCUaCUU-GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20002 0.68 0.395199
Target:  5'- uGCCGuCAAcGaCGCGAUcGGCCGCGCc -3'
miRNA:   3'- gCGGCcGUU-C-GCGCUAcUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37915 0.68 0.394307
Target:  5'- gGCCGGCGAGgcuucggccugcuCGCGAU---UCGCGCu -3'
miRNA:   3'- gCGGCCGUUC-------------GCGCUAcuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12555 0.68 0.394307
Target:  5'- gGCCGGCGgcgccguAGCGCccgc--CCGCGCGc -3'
miRNA:   3'- gCGGCCGU-------UCGCGcuacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 33458 0.68 0.394307
Target:  5'- gCGCUGGCAacucggucAGCGUGAUcacGAGCCcuucgucGCGCc -3'
miRNA:   3'- -GCGGCCGU--------UCGCGCUA---CUUGG-------CGCGc -5'
24116 3' -59.1 NC_005263.2 + 47212 0.68 0.386342
Target:  5'- cCGCCGGCG---GCGAcc-GCCGCGCu -3'
miRNA:   3'- -GCGGCCGUucgCGCUacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 14102 0.68 0.386342
Target:  5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3'
miRNA:   3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 31341 0.68 0.384586
Target:  5'- aCGCCGGCGgccgucaGGCGCGAcuccauaaagcccUGcuGCUGCGgGc -3'
miRNA:   3'- -GCGGCCGU-------UCGCGCU-------------ACu-UGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 20206 0.68 0.377618
Target:  5'- cCGCCGuCGAGUGCuuUGcccGACUGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGCGcuAC---UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19878 0.68 0.377618
Target:  5'- aGCgCGGCGAGCGCG----GCCGaUGCa -3'
miRNA:   3'- gCG-GCCGUUCGCGCuacuUGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19245 0.68 0.35225
Target:  5'- aGCCGGCuucuGGCGCGAcGAcUCGCa-- -3'
miRNA:   3'- gCGGCCGu---UCGCGCUaCUuGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 47466 0.68 0.363937
Target:  5'- gGCCGGCAcgucgcguAGCGUGgcGAccuacaccccagccgAUUGCGCGa -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 31393 0.68 0.36057
Target:  5'- uCGCgCGGUAGGUGCGcUGcAGCUGCuGCa -3'
miRNA:   3'- -GCG-GCCGUUCGCGCuAC-UUGGCG-CGc -5'
24116 3' -59.1 NC_005263.2 + 19758 0.68 0.36057
Target:  5'- gCGCUGGC-GGCGCucGUG-GCCGUGUGg -3'
miRNA:   3'- -GCGGCCGuUCGCGc-UACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 7057 0.68 0.377618
Target:  5'- gCGCCaauGGCAGGUGCGAgc-GCUGCGa- -3'
miRNA:   3'- -GCGG---CCGUUCGCGCUacuUGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.