miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46175 0.71 0.243961
Target:  5'- uCGCCGGUGccGGCGCGcucGUGcagaCGCGCGg -3'
miRNA:   3'- -GCGGCCGU--UCGCGC---UACuug-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12704 0.71 0.243961
Target:  5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3'
miRNA:   3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 21906 0.71 0.250229
Target:  5'- gGCCGccGCAucGCGCGGcc-GCCGCGCGg -3'
miRNA:   3'- gCGGC--CGUu-CGCGCUacuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2960 0.71 0.250229
Target:  5'- aGCUGcGCGAGCGUGAUGc-CCGUcaGCGg -3'
miRNA:   3'- gCGGC-CGUUCGCGCUACuuGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 29153 0.71 0.254054
Target:  5'- uGCCGGCugcgcucguaaccGGCGCGcucGAgcgcucguGCCGCGCGg -3'
miRNA:   3'- gCGGCCGu------------UCGCGCua-CU--------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47152 0.71 0.254696
Target:  5'- uGCCGGCAuugcauuccaugcaAGCGCauaGAGCgGCGCa -3'
miRNA:   3'- gCGGCCGU--------------UCGCGcuaCUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1856 0.71 0.25663
Target:  5'- gGCCGGCGAcGUGCGGUucuGgCGCGCc -3'
miRNA:   3'- gCGGCCGUU-CGCGCUAcu-UgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20873 0.71 0.25663
Target:  5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3'
miRNA:   3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5'
24116 3' -59.1 NC_005263.2 + 8536 0.71 0.25663
Target:  5'- uCGUCGGCucGGCgGUGAUGAauGCCGCGa- -3'
miRNA:   3'- -GCGGCCGu-UCG-CGCUACU--UGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 47363 0.71 0.25663
Target:  5'- uCGCCgaaaugGGC-GGCGCGuucGAugCGCGCGa -3'
miRNA:   3'- -GCGG------CCGuUCGCGCua-CUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42851 0.7 0.261847
Target:  5'- uGCCGGCAccgcccgcugaugacGGCGCc-UGAucgcgucaauggcguGCCGCGCGc -3'
miRNA:   3'- gCGGCCGU---------------UCGCGcuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 31612 0.7 0.263164
Target:  5'- uGCCGGU---CGCGAc-GGCCGCGCGg -3'
miRNA:   3'- gCGGCCGuucGCGCUacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8784 0.7 0.263164
Target:  5'- aCGCCGGCccGCGCGAgguucUGAAUacguUGUGCGu -3'
miRNA:   3'- -GCGGCCGuuCGCGCU-----ACUUG----GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 37682 0.7 0.263164
Target:  5'- cCGCCGGauCAGGCGUucguUGAACgCGCGCc -3'
miRNA:   3'- -GCGGCC--GUUCGCGcu--ACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30370 0.7 0.276637
Target:  5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3'
miRNA:   3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 10283 0.7 0.283578
Target:  5'- gCGUCGGCGacaugAGCGCcg-GAugCGCGCc -3'
miRNA:   3'- -GCGGCCGU-----UCGCGcuaCUugGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29893 0.7 0.283578
Target:  5'- gGCCGGacAGCGUG-UGAuACUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCGCuACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 31743 0.7 0.283578
Target:  5'- cCGCCGcCGAGCGaCGc--GGCCGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGC-GCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3344 0.7 0.283578
Target:  5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3'
miRNA:   3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.