Results 81 - 100 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 15404 | 0.7 | 0.286392 |
Target: 5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3' miRNA: 3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 2703 | 0.7 | 0.290655 |
Target: 5'- cCGCuCGGCAGGUGC-AUGcGCagCGCGCGu -3' miRNA: 3'- -GCG-GCCGUUCGCGcUACuUG--GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 29055 | 0.7 | 0.290655 |
Target: 5'- gGCCGcGC-GGCGCGuccucgGGGCgGCGCGc -3' miRNA: 3'- gCGGC-CGuUCGCGCua----CUUGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 23134 | 0.7 | 0.290655 |
Target: 5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3' miRNA: 3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 11515 | 0.7 | 0.290655 |
Target: 5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3' miRNA: 3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 2308 | 0.7 | 0.290655 |
Target: 5'- gGCCGGCAcGCccGCGuUGAACUG-GCGg -3' miRNA: 3'- gCGGCCGUuCG--CGCuACUUGGCgCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 46700 | 0.7 | 0.290655 |
Target: 5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3' miRNA: 3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 3208 | 0.7 | 0.29787 |
Target: 5'- aGCCGGCccGGCGCGccgcccgccccgAUGAcGCCGgGCa -3' miRNA: 3'- gCGGCCGu-UCGCGC------------UACU-UGGCgCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 21732 | 0.7 | 0.29787 |
Target: 5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3' miRNA: 3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 22511 | 0.7 | 0.300795 |
Target: 5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3' miRNA: 3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 5544 | 0.69 | 0.303742 |
Target: 5'- gGCCGGCAacggccuGGCGCGAaUGcaGACCGUucagcucgauuguGCGg -3' miRNA: 3'- gCGGCCGU-------UCGCGCU-AC--UUGGCG-------------CGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 8738 | 0.69 | 0.305223 |
Target: 5'- -cUCGGCGAGCGgGGUcGAgacguuuuuaacGCUGCGCGg -3' miRNA: 3'- gcGGCCGUUCGCgCUA-CU------------UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30489 | 0.69 | 0.310453 |
Target: 5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3' miRNA: 3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 29215 | 0.69 | 0.31196 |
Target: 5'- gGCCGGCGcguauuugccgucGGCGCGc--AGCgGCGCGc -3' miRNA: 3'- gCGGCCGU-------------UCGCGCuacUUGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30315 | 0.69 | 0.319576 |
Target: 5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3' miRNA: 3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 39094 | 0.69 | 0.319576 |
Target: 5'- aGCCGGaCGGcgaguacGCGCGAcucgUGcGCCGUGCGu -3' miRNA: 3'- gCGGCC-GUU-------CGCGCU----ACuUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 16581 | 0.69 | 0.320345 |
Target: 5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3' miRNA: 3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 42046 | 0.69 | 0.320345 |
Target: 5'- uGUCGGC--GCGCG-UGAAgCGCGCc -3' miRNA: 3'- gCGGCCGuuCGCGCuACUUgGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 16614 | 0.69 | 0.320345 |
Target: 5'- aCGCUGGacaAAGCGCGAacguaUGcuaaGAUUGCGCGa -3' miRNA: 3'- -GCGGCCg--UUCGCGCU-----AC----UUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 19913 | 0.69 | 0.320345 |
Target: 5'- aCGCCGGCAacGGCauGCaGAaGGcGCCGCGCu -3' miRNA: 3'- -GCGGCCGU--UCG--CG-CUaCU-UGGCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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