miRNA display CGI


Results 81 - 100 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 8258 0.68 0.377618
Target:  5'- aGCCGGguAuGCGCGuucgGAcgGCCacaGCGCGa -3'
miRNA:   3'- gCGGCCguU-CGCGCua--CU--UGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 7057 0.68 0.377618
Target:  5'- gCGCCaauGGCAGGUGCGAgc-GCUGCGa- -3'
miRNA:   3'- -GCGG---CCGUUCGCGCUacuUGGCGCgc -5'
24116 3' -59.1 NC_005263.2 + 20206 0.68 0.377618
Target:  5'- cCGCCGuCGAGUGCuuUGcccGACUGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGCGcuAC---UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19878 0.68 0.377618
Target:  5'- aGCgCGGCGAGCGCG----GCCGaUGCa -3'
miRNA:   3'- gCG-GCCGUUCGCGCuacuUGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 19136 0.68 0.369026
Target:  5'- uCGCCgGGCGcuuGCGCGucgucGUGA-CCGUGCa -3'
miRNA:   3'- -GCGG-CCGUu--CGCGC-----UACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20304 0.68 0.369026
Target:  5'- aCGCC-GCGAucacGacgGCGAUGuACCGCGCGa -3'
miRNA:   3'- -GCGGcCGUU----Cg--CGCUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 47466 0.68 0.363937
Target:  5'- gGCCGGCAcgucgcguAGCGUGgcGAccuacaccccagccgAUUGCGCGa -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 31393 0.68 0.36057
Target:  5'- uCGCgCGGUAGGUGCGcUGcAGCUGCuGCa -3'
miRNA:   3'- -GCG-GCCGUUCGCGCuAC-UUGGCG-CGc -5'
24116 3' -59.1 NC_005263.2 + 10879 0.68 0.36057
Target:  5'- -cUCGGCAccGGCGCGcgucGUGAGCgGCGUa -3'
miRNA:   3'- gcGGCCGU--UCGCGC----UACUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19758 0.68 0.36057
Target:  5'- gCGCUGGC-GGCGCucGUG-GCCGUGUGg -3'
miRNA:   3'- -GCGGCCGuUCGCGc-UACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1282 0.68 0.35225
Target:  5'- aGUCGGagcGGCGCGAaaGAUCGCGCu -3'
miRNA:   3'- gCGGCCgu-UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17320 0.68 0.35225
Target:  5'- cCGCCGaGCAGcagcgcauGCGCGAgGAAgUCGUGCGu -3'
miRNA:   3'- -GCGGC-CGUU--------CGCGCUaCUU-GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19245 0.68 0.35225
Target:  5'- aGCCGGCuucuGGCGCGAcGAcUCGCa-- -3'
miRNA:   3'- gCGGCCGu---UCGCGCUaCUuGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 8035 0.69 0.344067
Target:  5'- uGCgaGGCGuccGCGCcGUGGcGCCGCGCGa -3'
miRNA:   3'- gCGg-CCGUu--CGCGcUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27545 0.69 0.344067
Target:  5'- gGCCGGCAGGC-CGGgcacGAGCguCGCgGCGa -3'
miRNA:   3'- gCGGCCGUUCGcGCUa---CUUG--GCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 45119 0.69 0.339223
Target:  5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3'
miRNA:   3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17805 0.69 0.336021
Target:  5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3'
miRNA:   3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27276 0.69 0.336021
Target:  5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3'
miRNA:   3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30709 0.69 0.336021
Target:  5'- cCGCCcGcCAGGCGCGc--GGCCGCGCc -3'
miRNA:   3'- -GCGGcC-GUUCGCGCuacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42916 0.69 0.333635
Target:  5'- aCGCCGcGCcuGCagGCGAUGuucaaucaggcgcaAACCGCGCu -3'
miRNA:   3'- -GCGGC-CGuuCG--CGCUAC--------------UUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.