miRNA display CGI


Results 101 - 120 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 27741 0.69 0.328114
Target:  5'- uGUCGGC--GCGCGAUcAGCCauGCGCGc -3'
miRNA:   3'- gCGGCCGuuCGCGCUAcUUGG--CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21638 0.69 0.328114
Target:  5'- gCGCCGGaauGgGCGAauUGggUUGCGCa -3'
miRNA:   3'- -GCGGCCguuCgCGCU--ACuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19043 0.69 0.328114
Target:  5'- gCGCCGuaGCGGGcCGCGucGUGcuauccaaGGCCGCGCGu -3'
miRNA:   3'- -GCGGC--CGUUC-GCGC--UAC--------UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 9370 0.69 0.328114
Target:  5'- gCGCCGGC-GGCuGCGG-GAAUuucaGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCG-CGCUaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27366 0.69 0.328114
Target:  5'- cCGCCaGCGagcGGCGCGgcGGcgGCCgGCGCGc -3'
miRNA:   3'- -GCGGcCGU---UCGCGCuaCU--UGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16581 0.69 0.320345
Target:  5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3'
miRNA:   3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19913 0.69 0.320345
Target:  5'- aCGCCGGCAacGGCauGCaGAaGGcGCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCG--CG-CUaCU-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 42046 0.69 0.320345
Target:  5'- uGUCGGC--GCGCG-UGAAgCGCGCc -3'
miRNA:   3'- gCGGCCGuuCGCGCuACUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 16614 0.69 0.320345
Target:  5'- aCGCUGGacaAAGCGCGAacguaUGcuaaGAUUGCGCGa -3'
miRNA:   3'- -GCGGCCg--UUCGCGCU-----AC----UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 39094 0.69 0.319576
Target:  5'- aGCCGGaCGGcgaguacGCGCGAcucgUGcGCCGUGCGu -3'
miRNA:   3'- gCGGCC-GUU-------CGCGCU----ACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29215 0.69 0.31196
Target:  5'- gGCCGGCGcguauuugccgucGGCGCGc--AGCgGCGCGc -3'
miRNA:   3'- gCGGCCGU-------------UCGCGCuacUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8738 0.69 0.305223
Target:  5'- -cUCGGCGAGCGgGGUcGAgacguuuuuaacGCUGCGCGg -3'
miRNA:   3'- gcGGCCGUUCGCgCUA-CU------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 5544 0.69 0.303742
Target:  5'- gGCCGGCAacggccuGGCGCGAaUGcaGACCGUucagcucgauuguGCGg -3'
miRNA:   3'- gCGGCCGU-------UCGCGCU-AC--UUGGCG-------------CGC- -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3208 0.7 0.29787
Target:  5'- aGCCGGCccGGCGCGccgcccgccccgAUGAcGCCGgGCa -3'
miRNA:   3'- gCGGCCGu-UCGCGC------------UACU-UGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 21732 0.7 0.29787
Target:  5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3'
miRNA:   3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23134 0.7 0.290655
Target:  5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3'
miRNA:   3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29055 0.7 0.290655
Target:  5'- gGCCGcGC-GGCGCGuccucgGGGCgGCGCGc -3'
miRNA:   3'- gCGGC-CGuUCGCGCua----CUUGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.