Results 121 - 140 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 46700 | 0.7 | 0.290655 |
Target: 5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3' miRNA: 3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 23134 | 0.7 | 0.290655 |
Target: 5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3' miRNA: 3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 11515 | 0.7 | 0.290655 |
Target: 5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3' miRNA: 3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 2308 | 0.7 | 0.290655 |
Target: 5'- gGCCGGCAcGCccGCGuUGAACUG-GCGg -3' miRNA: 3'- gCGGCCGUuCG--CGCuACUUGGCgCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 15404 | 0.7 | 0.286392 |
Target: 5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3' miRNA: 3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 10283 | 0.7 | 0.283578 |
Target: 5'- gCGUCGGCGacaugAGCGCcg-GAugCGCGCc -3' miRNA: 3'- -GCGGCCGU-----UCGCGcuaCUugGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 29893 | 0.7 | 0.283578 |
Target: 5'- gGCCGGacAGCGUG-UGAuACUGCGCGc -3' miRNA: 3'- gCGGCCguUCGCGCuACU-UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 3344 | 0.7 | 0.283578 |
Target: 5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3' miRNA: 3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 31743 | 0.7 | 0.283578 |
Target: 5'- cCGCCGcCGAGCGaCGc--GGCCGCGCGc -3' miRNA: 3'- -GCGGCcGUUCGC-GCuacUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 30370 | 0.7 | 0.276637 |
Target: 5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3' miRNA: 3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 37682 | 0.7 | 0.263164 |
Target: 5'- cCGCCGGauCAGGCGUucguUGAACgCGCGCc -3' miRNA: 3'- -GCGGCC--GUUCGCGcu--ACUUG-GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 8784 | 0.7 | 0.263164 |
Target: 5'- aCGCCGGCccGCGCGAgguucUGAAUacguUGUGCGu -3' miRNA: 3'- -GCGGCCGuuCGCGCU-----ACUUG----GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 31612 | 0.7 | 0.263164 |
Target: 5'- uGCCGGU---CGCGAc-GGCCGCGCGg -3' miRNA: 3'- gCGGCCGuucGCGCUacUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 42851 | 0.7 | 0.261847 |
Target: 5'- uGCCGGCAccgcccgcugaugacGGCGCc-UGAucgcgucaauggcguGCCGCGCGc -3' miRNA: 3'- gCGGCCGU---------------UCGCGcuACU---------------UGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 47363 | 0.71 | 0.25663 |
Target: 5'- uCGCCgaaaugGGC-GGCGCGuucGAugCGCGCGa -3' miRNA: 3'- -GCGG------CCGuUCGCGCua-CUugGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 8536 | 0.71 | 0.25663 |
Target: 5'- uCGUCGGCucGGCgGUGAUGAauGCCGCGa- -3' miRNA: 3'- -GCGGCCGu-UCG-CGCUACU--UGGCGCgc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 1856 | 0.71 | 0.25663 |
Target: 5'- gGCCGGCGAcGUGCGGUucuGgCGCGCc -3' miRNA: 3'- gCGGCCGUU-CGCGCUAcu-UgGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 20873 | 0.71 | 0.25663 |
Target: 5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3' miRNA: 3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 47152 | 0.71 | 0.254696 |
Target: 5'- uGCCGGCAuugcauuccaugcaAGCGCauaGAGCgGCGCa -3' miRNA: 3'- gCGGCCGU--------------UCGCGcuaCUUGgCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 29153 | 0.71 | 0.254054 |
Target: 5'- uGCCGGCugcgcucguaaccGGCGCGcucGAgcgcucguGCCGCGCGg -3' miRNA: 3'- gCGGCCGu------------UCGCGCua-CU--------UGGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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