miRNA display CGI


Results 161 - 180 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 26197 0.72 0.214558
Target:  5'- cCGCgCGGCGGccGCGCGAUGcggcGGCCGUucGCGa -3'
miRNA:   3'- -GCG-GCCGUU--CGCGCUAC----UUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 19319 0.72 0.214002
Target:  5'- cCGCCGGCu-GUGCGGUGGucgaugucgaaguACuCGCGCc -3'
miRNA:   3'- -GCGGCCGuuCGCGCUACU-------------UG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 44580 0.72 0.209054
Target:  5'- aCGCCGGCcgcGAGaCGCuGAaGAagauuGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG---UUC-GCG-CUaCU-----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34894 0.72 0.203674
Target:  5'- gCGCaGGCGcucacgccuGGCGCGAaugucgaccugUGAugCGCGCGg -3'
miRNA:   3'- -GCGgCCGU---------UCGCGCU-----------ACUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19171 0.72 0.203674
Target:  5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3'
miRNA:   3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 689 0.72 0.203674
Target:  5'- uGCuCGGUGAGCGCGAUcguGCCGcCGCc -3'
miRNA:   3'- gCG-GCCGUUCGCGCUAcu-UGGC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 18702 0.72 0.198413
Target:  5'- gGCgCGGCAGGCGCGGgcgGcAACCcuuuccuguaaGCGCGu -3'
miRNA:   3'- gCG-GCCGUUCGCGCUa--C-UUGG-----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20417 0.72 0.193272
Target:  5'- cCGCCGGCGccGGCGCGcacaaGAaggcgGCCGUGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCua---CU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1941 0.72 0.193272
Target:  5'- gCGCCGGCAccGGCGaCGccGGcaACCGCGuCGa -3'
miRNA:   3'- -GCGGCCGU--UCGC-GCuaCU--UGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 20131 0.73 0.188247
Target:  5'- --aCGGCAAGCGCGAcGGuacgGCCGuCGCGc -3'
miRNA:   3'- gcgGCCGUUCGCGCUaCU----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 3240 0.73 0.183338
Target:  5'- aCGacaGGUAGGCGCGAUc-GCCGCGCa -3'
miRNA:   3'- -GCgg-CCGUUCGCGCUAcuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 881 0.73 0.183338
Target:  5'- gGCCGGCGcuucguucAGCGCGgcGGucGCCGCcgGCGg -3'
miRNA:   3'- gCGGCCGU--------UCGCGCuaCU--UGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 34022 0.73 0.178542
Target:  5'- aGCCGGUAccAGC-CGAcaUGGGCCGgCGCGg -3'
miRNA:   3'- gCGGCCGU--UCGcGCU--ACUUGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 36680 0.73 0.178069
Target:  5'- -cCUGGCAgcauucgAGCGCGGgcaagGAGCCGCGCc -3'
miRNA:   3'- gcGGCCGU-------UCGCGCUa----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 39691 0.73 0.173858
Target:  5'- aCGCgauggGGCGAGCGCGAgcugGAaaugGCCGgCGCGg -3'
miRNA:   3'- -GCGg----CCGUUCGCGCUa---CU----UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 16427 0.73 0.173858
Target:  5'- gCGUCGGCGcuGGCGCGgcGGGCCuCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuaCUUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 6462 0.73 0.173858
Target:  5'- aGCaCGaGCGAGCGCG-UGGGCCGCaGUGc -3'
miRNA:   3'- gCG-GC-CGUUCGCGCuACUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 29323 0.73 0.173858
Target:  5'- gCGCgCGGCGAGCaCGAU-AACCaGCGCGa -3'
miRNA:   3'- -GCG-GCCGUUCGcGCUAcUUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 26317 0.73 0.169284
Target:  5'- uCGCgGGCGAuGCGCGAgUGAuUCGCGCc -3'
miRNA:   3'- -GCGgCCGUU-CGCGCU-ACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 15695 0.73 0.166591
Target:  5'- gGCCGGCGAGCucgcagcgacuacggGCGGUucGACCaGCGCGg -3'
miRNA:   3'- gCGGCCGUUCG---------------CGCUAc-UUGG-CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.