miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 15478 0.66 0.480453
Target:  5'- uGCCGuGCugcggcGGCGCGGUGAGCaucaGCa -3'
miRNA:   3'- gCGGC-CGu-----UCGCGCUACUUGgcg-CGc -5'
24116 3' -59.1 NC_005263.2 + 15695 0.73 0.166591
Target:  5'- gGCCGGCGAGCucgcagcgacuacggGCGGUucGACCaGCGCGg -3'
miRNA:   3'- gCGGCCGUUCG---------------CGCUAc-UUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16427 0.73 0.173858
Target:  5'- gCGUCGGCGcuGGCGCGgcGGGCCuCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuaCUUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 16581 0.69 0.320345
Target:  5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3'
miRNA:   3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16614 0.69 0.320345
Target:  5'- aCGCUGGacaAAGCGCGAacguaUGcuaaGAUUGCGCGa -3'
miRNA:   3'- -GCGGCCg--UUCGCGCU-----AC----UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17320 0.68 0.35225
Target:  5'- cCGCCGaGCAGcagcgcauGCGCGAgGAAgUCGUGCGu -3'
miRNA:   3'- -GCGGC-CGUU--------CGCGCUaCUU-GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17639 0.67 0.441387
Target:  5'- gCGCCGGauguGGCgcaacGCGAaGGccGCCGCGCu -3'
miRNA:   3'- -GCGGCCgu--UCG-----CGCUaCU--UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17752 0.77 0.087646
Target:  5'- gCGCCGGCGgcAGCGCG----GCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17805 0.69 0.336021
Target:  5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3'
miRNA:   3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 18430 0.76 0.117018
Target:  5'- uCGUCGGCGAugaaccgcucgagguGCGCG-UGAagcaGCCGCGCGg -3'
miRNA:   3'- -GCGGCCGUU---------------CGCGCuACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 18702 0.72 0.198413
Target:  5'- gGCgCGGCAGGCGCGGgcgGcAACCcuuuccuguaaGCGCGu -3'
miRNA:   3'- gCG-GCCGUUCGCGCUa--C-UUGG-----------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 18908 0.8 0.055751
Target:  5'- gCGCCGGCcuGCGuCGAgcguGACCGCGCGg -3'
miRNA:   3'- -GCGGCCGuuCGC-GCUac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19043 0.69 0.328114
Target:  5'- gCGCCGuaGCGGGcCGCGucGUGcuauccaaGGCCGCGCGu -3'
miRNA:   3'- -GCGGC--CGUUC-GCGC--UAC--------UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19136 0.68 0.369026
Target:  5'- uCGCCgGGCGcuuGCGCGucgucGUGA-CCGUGCa -3'
miRNA:   3'- -GCGG-CCGUu--CGCGC-----UACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19171 0.72 0.203674
Target:  5'- cCGCCGGCGcGGCuCGuc-GGCCGCGCGu -3'
miRNA:   3'- -GCGGCCGU-UCGcGCuacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19245 0.68 0.35225
Target:  5'- aGCCGGCuucuGGCGCGAcGAcUCGCa-- -3'
miRNA:   3'- gCGGCCGu---UCGCGCUaCUuGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 19319 0.72 0.214002
Target:  5'- cCGCCGGCu-GUGCGGUGGucgaugucgaaguACuCGCGCc -3'
miRNA:   3'- -GCGGCCGuuCGCGCUACU-------------UG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19676 0.67 0.404185
Target:  5'- gGCCGGUgAAGCucaGCGAUGuGCUGaaaGCGa -3'
miRNA:   3'- gCGGCCG-UUCG---CGCUACuUGGCg--CGC- -5'
24116 3' -59.1 NC_005263.2 + 19758 0.68 0.36057
Target:  5'- gCGCUGGC-GGCGCucGUG-GCCGUGUGg -3'
miRNA:   3'- -GCGGCCGuUCGCGc-UACuUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.