miRNA display CGI


Results 101 - 120 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 22322 0.67 0.431903
Target:  5'- uGCCGGCAcgcucAGCGCGcgG-GCUGCu-- -3'
miRNA:   3'- gCGGCCGU-----UCGCGCuaCuUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 22465 0.66 0.490483
Target:  5'- --aCGGCAgcgacAGCGCGAUcAACUacgGCGCGa -3'
miRNA:   3'- gcgGCCGU-----UCGCGCUAcUUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23134 0.7 0.290655
Target:  5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3'
miRNA:   3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 23259 0.67 0.4133
Target:  5'- cCGCCGGCuGGCGCaccgGcACCGC-CGu -3'
miRNA:   3'- -GCGGCCGuUCGCGcua-CuUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 23570 0.67 0.42254
Target:  5'- aGCCGGCAGGCaCGA---ACC-CGCa -3'
miRNA:   3'- gCGGCCGUUCGcGCUacuUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 23876 0.68 0.377618
Target:  5'- cCGCCgcaaGGCGaagauuucaacGGCGCGcUGAACCaggucGCGCGc -3'
miRNA:   3'- -GCGG----CCGU-----------UCGCGCuACUUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23913 0.66 0.460701
Target:  5'- gCGCCcGCGAGCGUGAccgucgcuuUGGcgGCuUGCGCGu -3'
miRNA:   3'- -GCGGcCGUUCGCGCU---------ACU--UG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 24678 0.66 0.494522
Target:  5'- uCGCCGaacaucgagcGCAugAGCGCGuUGAucgacgggcaaucgcAUCGCGCGa -3'
miRNA:   3'- -GCGGC----------CGU--UCGCGCuACU---------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 24689 0.75 0.136422
Target:  5'- gCGCCGGUAacggcGGCGCGccGAacguGCCGgGCGg -3'
miRNA:   3'- -GCGGCCGU-----UCGCGCuaCU----UGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 26197 0.72 0.214558
Target:  5'- cCGCgCGGCGGccGCGCGAUGcggcGGCCGUucGCGa -3'
miRNA:   3'- -GCG-GCCGUU--CGCGCUAC----UUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 26317 0.73 0.169284
Target:  5'- uCGCgGGCGAuGCGCGAgUGAuUCGCGCc -3'
miRNA:   3'- -GCGgCCGUU-CGCGCU-ACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 26716 0.66 0.497561
Target:  5'- gGCCGGCcugcggcAGCGCGAagcgcaccaucacgUcGAGuuGCGCa -3'
miRNA:   3'- gCGGCCGu------UCGCGCU--------------A-CUUggCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27114 0.74 0.140184
Target:  5'- aCGCCGGCAcgucgacgcgcaGGCGCGc--AGCCGCGuCGg -3'
miRNA:   3'- -GCGGCCGU------------UCGCGCuacUUGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 27226 0.66 0.470524
Target:  5'- cCGCCGcucGUGAGCGUGAUcGcGCCGC-CGg -3'
miRNA:   3'- -GCGGC---CGUUCGCGCUA-CuUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 27276 0.69 0.336021
Target:  5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3'
miRNA:   3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27366 0.69 0.328114
Target:  5'- cCGCCaGCGagcGGCGCGgcGGcgGCCgGCGCGc -3'
miRNA:   3'- -GCGGcCGU---UCGCGCuaCU--UGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27545 0.69 0.344067
Target:  5'- gGCCGGCAGGC-CGGgcacGAGCguCGCgGCGa -3'
miRNA:   3'- gCGGCCGUUCGcGCUa---CUUG--GCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 27741 0.69 0.328114
Target:  5'- uGUCGGC--GCGCGAUcAGCCauGCGCGc -3'
miRNA:   3'- gCGGCCGuuCGCGCUAcUUGG--CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27887 0.65 0.507752
Target:  5'- gGCCGGC-GGCGCGcagucgGGcaaagcacucgacgGCgGCGCGu -3'
miRNA:   3'- gCGGCCGuUCGCGCua----CU--------------UGgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.