miRNA display CGI


Results 121 - 140 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 27954 0.71 0.225937
Target:  5'- aGCCGGacGGCGCgGAUGGcccagagcuGCUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCG-CUACU---------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28420 0.77 0.095312
Target:  5'- gCGCCGGCAcGCGCG-UGAACgucgcgggcaGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCuACUUGg---------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 28804 0.72 0.220184
Target:  5'- aGCCGGCGGGcCGCGuuuccaaGAACuCGcCGCGa -3'
miRNA:   3'- gCGGCCGUUC-GCGCua-----CUUG-GC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 29055 0.7 0.290655
Target:  5'- gGCCGcGC-GGCGCGuccucgGGGCgGCGCGc -3'
miRNA:   3'- gCGGC-CGuUCGCGCua----CUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29153 0.71 0.254054
Target:  5'- uGCCGGCugcgcucguaaccGGCGCGcucGAgcgcucguGCCGCGCGg -3'
miRNA:   3'- gCGGCCGu------------UCGCGCua-CU--------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29215 0.69 0.31196
Target:  5'- gGCCGGCGcguauuugccgucGGCGCGc--AGCgGCGCGc -3'
miRNA:   3'- gCGGCCGU-------------UCGCGCuacUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29323 0.73 0.173858
Target:  5'- gCGCgCGGCGAGCaCGAU-AACCaGCGCGa -3'
miRNA:   3'- -GCG-GCCGUUCGcGCUAcUUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29558 0.67 0.450987
Target:  5'- uGCCGGgcuGCGCGAacuucuUGAACgCGCucGCGg -3'
miRNA:   3'- gCGGCCguuCGCGCU------ACUUG-GCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 29788 0.66 0.500609
Target:  5'- cCGUCGGCGucguagauuuccGGCGCGuauugcGAugCaGCGCGc -3'
miRNA:   3'- -GCGGCCGU------------UCGCGCua----CUugG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29893 0.7 0.283578
Target:  5'- gGCCGGacAGCGUG-UGAuACUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCGCuACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30076 0.66 0.460701
Target:  5'- aGCCGGCGAGUuuGUcgauGGUGGACaUGCGUu -3'
miRNA:   3'- gCGGCCGUUCG--CG----CUACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30265 0.74 0.160458
Target:  5'- uCGUCGGCgAAGCGCugcgcaaucGGGCCGCGCGc -3'
miRNA:   3'- -GCGGCCG-UUCGCGcua------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30367 0.66 0.500609
Target:  5'- uCGUCGuGC-AGCGCuucGggGAugUGCGCGa -3'
miRNA:   3'- -GCGGC-CGuUCGCG---CuaCUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30370 0.7 0.276637
Target:  5'- cCGCCGGCGccgAGUGCGAgccccaUGcGGCgGCGCu -3'
miRNA:   3'- -GCGGCCGU---UCGCGCU------AC-UUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30428 0.66 0.480453
Target:  5'- gGUCGGUgcggucGAGCGCGAgcAGCgugaGCGCGg -3'
miRNA:   3'- gCGGCCG------UUCGCGCUacUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30709 0.69 0.336021
Target:  5'- cCGCCcGcCAGGCGCGc--GGCCGCGCc -3'
miRNA:   3'- -GCGGcC-GUUCGCGCuacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30919 0.67 0.42254
Target:  5'- aGCgCGGCGAcggcguacGCGCGA---GCUGCGCa -3'
miRNA:   3'- gCG-GCCGUU--------CGCGCUacuUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.