miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 38552 0.75 0.118967
Target:  5'- cCGCCuGGCAAGcCGCGAgc-GCCGCGuCGg -3'
miRNA:   3'- -GCGG-CCGUUC-GCGCUacuUGGCGC-GC- -5'
24116 3' -59.1 NC_005263.2 + 38264 0.67 0.4133
Target:  5'- aGUCGaGCAAGCGC-----GCCGCGCc -3'
miRNA:   3'- gCGGC-CGUUCGCGcuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37939 0.71 0.238431
Target:  5'- cCGCCGGCAgccGGUGCGcaaccggccgauGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---UCGCGCuacu--------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37915 0.68 0.394307
Target:  5'- gGCCGGCGAGgcuucggccugcuCGCGAU---UCGCGCu -3'
miRNA:   3'- gCGGCCGUUC-------------GCGCUAcuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37682 0.7 0.263164
Target:  5'- cCGCCGGauCAGGCGUucguUGAACgCGCGCc -3'
miRNA:   3'- -GCGGCC--GUUCGCGcu--ACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 37443 0.74 0.152049
Target:  5'- aCGUCGGCGcGCGCGGU---CUGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCUAcuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 36680 0.73 0.178069
Target:  5'- -cCUGGCAgcauucgAGCGCGGgcaagGAGCCGCGCc -3'
miRNA:   3'- gcGGCCGU-------UCGCGCUa----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 36566 0.74 0.156202
Target:  5'- aGCgCGGCAAgGUGaCGAcGAACCGCGCc -3'
miRNA:   3'- gCG-GCCGUU-CGC-GCUaCUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 35568 0.71 0.225356
Target:  5'- cCGCCGGCcgcCGCGAacgUGAAugcgaacgccaacCCGCGCGa -3'
miRNA:   3'- -GCGGCCGuucGCGCU---ACUU-------------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 35419 0.71 0.225937
Target:  5'- aCGCCGGCAAGCucgacGCGAacgacGACCccgGCGCGc -3'
miRNA:   3'- -GCGGCCGUUCG-----CGCUac---UUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34894 0.72 0.203674
Target:  5'- gCGCaGGCGcucacgccuGGCGCGAaugucgaccugUGAugCGCGCGg -3'
miRNA:   3'- -GCGgCCGU---------UCGCGCU-----------ACUugGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 34022 0.73 0.178542
Target:  5'- aGCCGGUAccAGC-CGAcaUGGGCCGgCGCGg -3'
miRNA:   3'- gCGGCCGU--UCGcGCU--ACUUGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 34001 0.66 0.489475
Target:  5'- gGCCGuguuggcugcgucGCGGcGCGCGAUccaGAGCUGCuGCGg -3'
miRNA:   3'- gCGGC-------------CGUU-CGCGCUA---CUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 33964 0.75 0.136422
Target:  5'- gGCCGGCGAGUguGCGgcGAAUCGUaGCGg -3'
miRNA:   3'- gCGGCCGUUCG--CGCuaCUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 33951 0.66 0.470524
Target:  5'- cCGCCGGCccgAAGuCGCcaagGcGGCCGCGCu -3'
miRNA:   3'- -GCGGCCG---UUC-GCGcua-C-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 33458 0.68 0.394307
Target:  5'- gCGCUGGCAacucggucAGCGUGAUcacGAGCCcuucgucGCGCc -3'
miRNA:   3'- -GCGGCCGU--------UCGCGCUA---CUUGG-------CGCGc -5'
24116 3' -59.1 NC_005263.2 + 32879 0.67 0.404185
Target:  5'- uGCCGGCGGGCGgCGA-GuuUCGUgGCGu -3'
miRNA:   3'- gCGGCCGUUCGC-GCUaCuuGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 32669 0.66 0.480453
Target:  5'- gCGCgGGUcGGCgGCGAUGucgaCGUGCGu -3'
miRNA:   3'- -GCGgCCGuUCG-CGCUACuug-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 32571 0.67 0.403281
Target:  5'- uCGCCGaGguucaggacaaCGAGCGCGAUGAgcacaucGCCGaGCGu -3'
miRNA:   3'- -GCGGC-C-----------GUUCGCGCUACU-------UGGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.