miRNA display CGI


Results 101 - 120 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 23259 0.67 0.4133
Target:  5'- cCGCCGGCuGGCGCaccgGcACCGC-CGu -3'
miRNA:   3'- -GCGGCCGuUCGCGcua-CuUGGCGcGC- -5'
24116 3' -59.1 NC_005263.2 + 23134 0.7 0.290655
Target:  5'- gGCCGGCcAGCaucguguuGcCGAUcugcGAACCGCGCa -3'
miRNA:   3'- gCGGCCGuUCG--------C-GCUA----CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22465 0.66 0.490483
Target:  5'- --aCGGCAgcgacAGCGCGAUcAACUacgGCGCGa -3'
miRNA:   3'- gcgGCCGU-----UCGCGCUAcUUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22322 0.67 0.431903
Target:  5'- uGCCGGCAcgcucAGCGCGcgG-GCUGCu-- -3'
miRNA:   3'- gCGGCCGU-----UCGCGCuaCuUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 22117 0.75 0.128821
Target:  5'- cCGCCGGCAcgcugcaAGCGCGAUcgccGGACgGgGCGc -3'
miRNA:   3'- -GCGGCCGU-------UCGCGCUA----CUUGgCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 21906 0.71 0.250229
Target:  5'- gGCCGccGCAucGCGCGGcc-GCCGCGCGg -3'
miRNA:   3'- gCGGC--CGUu-CGCGCUacuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 21732 0.7 0.29787
Target:  5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3'
miRNA:   3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21638 0.69 0.328114
Target:  5'- gCGCCGGaauGgGCGAauUGggUUGCGCa -3'
miRNA:   3'- -GCGGCCguuCgCGCU--ACuuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 21329 0.71 0.224198
Target:  5'- aCGCCGucggucugauguucGCGAGCGCGcugaAUGAACgUGCGCa -3'
miRNA:   3'- -GCGGC--------------CGUUCGCGC----UACUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 21237 0.67 0.450987
Target:  5'- aGCCGuCAccGGCGaCGAaGuAGCCGCGCa -3'
miRNA:   3'- gCGGCcGU--UCGC-GCUaC-UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20873 0.71 0.25663
Target:  5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3'
miRNA:   3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5'
24116 3' -59.1 NC_005263.2 + 20808 0.66 0.480453
Target:  5'- gCGCCGugguauuucuGCAGGCGCGGcucGGCCucGCGCa -3'
miRNA:   3'- -GCGGC----------CGUUCGCGCUac-UUGG--CGCGc -5'
24116 3' -59.1 NC_005263.2 + 20723 0.75 0.122283
Target:  5'- aGCCGGUcAGCGCGccGGccgccGCCGCGCc -3'
miRNA:   3'- gCGGCCGuUCGCGCuaCU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20417 0.72 0.193272
Target:  5'- cCGCCGGCGccGGCGCGcacaaGAaggcgGCCGUGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCua---CU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20346 0.67 0.412383
Target:  5'- uGCCGccGCAccucgggGGCGCGcAUGGcugAUCGCGCGc -3'
miRNA:   3'- gCGGC--CGU-------UCGCGC-UACU---UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20304 0.68 0.369026
Target:  5'- aCGCC-GCGAucacGacgGCGAUGuACCGCGCGa -3'
miRNA:   3'- -GCGGcCGUU----Cg--CGCUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20206 0.68 0.377618
Target:  5'- cCGCCGuCGAGUGCuuUGcccGACUGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGCGcuAC---UUGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.