Results 141 - 160 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24116 | 3' | -59.1 | NC_005263.2 | + | 16614 | 0.69 | 0.320345 |
Target: 5'- aCGCUGGacaAAGCGCGAacguaUGcuaaGAUUGCGCGa -3' miRNA: 3'- -GCGGCCg--UUCGCGCU-----AC----UUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 16581 | 0.69 | 0.320345 |
Target: 5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3' miRNA: 3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 16427 | 0.73 | 0.173858 |
Target: 5'- gCGUCGGCGcuGGCGCGgcGGGCCuCGCu -3' miRNA: 3'- -GCGGCCGU--UCGCGCuaCUUGGcGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 15695 | 0.73 | 0.166591 |
Target: 5'- gGCCGGCGAGCucgcagcgacuacggGCGGUucGACCaGCGCGg -3' miRNA: 3'- gCGGCCGUUCG---------------CGCUAc-UUGG-CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 15478 | 0.66 | 0.480453 |
Target: 5'- uGCCGuGCugcggcGGCGCGGUGAGCaucaGCa -3' miRNA: 3'- gCGGC-CGu-----UCGCGCUACUUGgcg-CGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 15404 | 0.7 | 0.286392 |
Target: 5'- cCGCaCGGCGGGCagcaagcCGGUGAGCCggccguacagguacgGCGCGa -3' miRNA: 3'- -GCG-GCCGUUCGc------GCUACUUGG---------------CGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 14171 | 0.72 | 0.220184 |
Target: 5'- gGCCGGCGgccGGUGUGcgcGAGCUGCGUGc -3' miRNA: 3'- gCGGCCGU---UCGCGCua-CUUGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 14102 | 0.68 | 0.386342 |
Target: 5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3' miRNA: 3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 14052 | 0.71 | 0.243961 |
Target: 5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3' miRNA: 3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 13754 | 0.67 | 0.403281 |
Target: 5'- uGCCGGUuuacacggcgacAGGCGCGucgcuuaAUGGGCCGCauGCu -3' miRNA: 3'- gCGGCCG------------UUCGCGC-------UACUUGGCG--CGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 13554 | 0.66 | 0.470524 |
Target: 5'- gGCaCGGUguacGGGCGCGGcacGAGCgGCGUGu -3' miRNA: 3'- gCG-GCCG----UUCGCGCUa--CUUGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 13362 | 0.67 | 0.441387 |
Target: 5'- uGCgGGC-GGCGCGA--AACaCGCGCc -3' miRNA: 3'- gCGgCCGuUCGCGCUacUUG-GCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 13006 | 0.67 | 0.4133 |
Target: 5'- gGCCGGUcGGCGUGAU--GCCGaguaGCu -3' miRNA: 3'- gCGGCCGuUCGCGCUAcuUGGCg---CGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 12871 | 0.67 | 0.4133 |
Target: 5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3' miRNA: 3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 12704 | 0.71 | 0.243961 |
Target: 5'- uGCCGGCGuaggggccguccGGCuCGGUGuucAGCCGCGCc -3' miRNA: 3'- gCGGCCGU------------UCGcGCUAC---UUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 12664 | 0.66 | 0.460701 |
Target: 5'- uCGUCGGCcGGCGCGccgGggUCGUcguucGCGu -3' miRNA: 3'- -GCGGCCGuUCGCGCua-CuuGGCG-----CGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 12555 | 0.68 | 0.394307 |
Target: 5'- gGCCGGCGgcgccguAGCGCccgc--CCGCGCGc -3' miRNA: 3'- gCGGCCGU-------UCGCGcuacuuGGCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 12337 | 0.66 | 0.464617 |
Target: 5'- uCGCCGGCGuggccgguuuccucaAGCGUcucGcGCCGCGCc -3' miRNA: 3'- -GCGGCCGU---------------UCGCGcuaCuUGGCGCGc -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 11515 | 0.7 | 0.290655 |
Target: 5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3' miRNA: 3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5' |
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24116 | 3' | -59.1 | NC_005263.2 | + | 11464 | 0.66 | 0.490483 |
Target: 5'- aGCCGaGCucGCGCu----GCCGCGCa -3' miRNA: 3'- gCGGC-CGuuCGCGcuacuUGGCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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