miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 31612 0.7 0.263164
Target:  5'- uGCCGGU---CGCGAc-GGCCGCGCGg -3'
miRNA:   3'- gCGGCCGuucGCGCUacUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 29893 0.7 0.283578
Target:  5'- gGCCGGacAGCGUG-UGAuACUGCGCGc -3'
miRNA:   3'- gCGGCCguUCGCGCuACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 41354 0.76 0.103611
Target:  5'- uCGcCCGGC--GCGCGAUGGACgugaCGCGCGa -3'
miRNA:   3'- -GC-GGCCGuuCGCGCUACUUG----GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 33964 0.75 0.136422
Target:  5'- gGCCGGCGAGUguGCGgcGAAUCGUaGCGg -3'
miRNA:   3'- gCGGCCGUUCG--CGCuaCUUGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 15695 0.73 0.166591
Target:  5'- gGCCGGCGAGCucgcagcgacuacggGCGGUucGACCaGCGCGg -3'
miRNA:   3'- gCGGCCGUUCG---------------CGCUAc-UUGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20417 0.72 0.193272
Target:  5'- cCGCCGGCGccGGCGCGcacaaGAaggcgGCCGUGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCua---CU-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19319 0.72 0.214002
Target:  5'- cCGCCGGCu-GUGCGGUGGucgaugucgaaguACuCGCGCc -3'
miRNA:   3'- -GCGGCCGuuCGCGCUACU-------------UG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 6616 0.71 0.225937
Target:  5'- uCGgCGGCGcgcucGGCGCGGUcGAGCaguCGCGCGu -3'
miRNA:   3'- -GCgGCCGU-----UCGCGCUA-CUUG---GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 14052 0.71 0.243961
Target:  5'- gCGCCGcGuCGAGCGCauUGAgcgcGCCGCGCc -3'
miRNA:   3'- -GCGGC-C-GUUCGCGcuACU----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 29153 0.71 0.254054
Target:  5'- uGCCGGCugcgcucguaaccGGCGCGcucGAgcgcucguGCCGCGCGg -3'
miRNA:   3'- gCGGCCGu------------UCGCGCua-CU--------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 38264 0.67 0.4133
Target:  5'- aGUCGaGCAAGCGC-----GCCGCGCc -3'
miRNA:   3'- gCGGC-CGUUCGCGcuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 32571 0.67 0.403281
Target:  5'- uCGCCGaGguucaggacaaCGAGCGCGAUGAgcacaucGCCGaGCGu -3'
miRNA:   3'- -GCGGC-C-----------GUUCGCGCUACU-------UGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 11515 0.7 0.290655
Target:  5'- -aCUGGuCGcGCGCGAUGAagGCgGCGCGg -3'
miRNA:   3'- gcGGCC-GUuCGCGCUACU--UGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3208 0.7 0.29787
Target:  5'- aGCCGGCccGGCGCGccgcccgccccgAUGAcGCCGgGCa -3'
miRNA:   3'- gCGGCCGu-UCGCGC------------UACU-UGGCgCGc -5'
24116 3' -59.1 NC_005263.2 + 42046 0.69 0.320345
Target:  5'- uGUCGGC--GCGCG-UGAAgCGCGCc -3'
miRNA:   3'- gCGGCCGuuCGCGCuACUUgGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27741 0.69 0.328114
Target:  5'- uGUCGGC--GCGCGAUcAGCCauGCGCGc -3'
miRNA:   3'- gCGGCCGuuCGCGCUAcUUGG--CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19758 0.68 0.36057
Target:  5'- gCGCUGGC-GGCGCucGUG-GCCGUGUGg -3'
miRNA:   3'- -GCGGCCGuUCGCGc-UACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19136 0.68 0.369026
Target:  5'- uCGCCgGGCGcuuGCGCGucgucGUGA-CCGUGCa -3'
miRNA:   3'- -GCGG-CCGUu--CGCGC-----UACUuGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 14102 0.68 0.386342
Target:  5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3'
miRNA:   3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 12555 0.68 0.394307
Target:  5'- gGCCGGCGgcgccguAGCGCccgc--CCGCGCGc -3'
miRNA:   3'- gCGGCCGU-------UCGCGcuacuuGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.