miRNA display CGI


Results 101 - 120 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 8738 0.69 0.305223
Target:  5'- -cUCGGCGAGCGgGGUcGAgacguuuuuaacGCUGCGCGg -3'
miRNA:   3'- gcGGCCGUUCGCgCUA-CU------------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 16614 0.69 0.320345
Target:  5'- aCGCUGGacaAAGCGCGAacguaUGcuaaGAUUGCGCGa -3'
miRNA:   3'- -GCGGCCg--UUCGCGCU-----AC----UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 12337 0.66 0.464617
Target:  5'- uCGCCGGCGuggccgguuuccucaAGCGUcucGcGCCGCGCc -3'
miRNA:   3'- -GCGGCCGU---------------UCGCGcuaCuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46912 0.66 0.500609
Target:  5'- aCGCCGG-AAGaaCGCGcu--GCCGCGCa -3'
miRNA:   3'- -GCGGCCgUUC--GCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 19245 0.68 0.35225
Target:  5'- aGCCGGCuucuGGCGCGAcGAcUCGCa-- -3'
miRNA:   3'- gCGGCCGu---UCGCGCUaCUuGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 31393 0.68 0.36057
Target:  5'- uCGCgCGGUAGGUGCGcUGcAGCUGCuGCa -3'
miRNA:   3'- -GCG-GCCGUUCGCGCuAC-UUGGCG-CGc -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22465 0.66 0.490483
Target:  5'- --aCGGCAgcgacAGCGCGAUcAACUacgGCGCGa -3'
miRNA:   3'- gcgGCCGU-----UCGCGCUAcUUGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3344 0.7 0.283578
Target:  5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3'
miRNA:   3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20873 0.71 0.25663
Target:  5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3'
miRNA:   3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5'
24116 3' -59.1 NC_005263.2 + 46700 0.7 0.290655
Target:  5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1224 0.66 0.470524
Target:  5'- gCGCaucggGGaCGAGCGCGAUGucauccGGCCaggauGCGCGa -3'
miRNA:   3'- -GCGg----CC-GUUCGCGCUAC------UUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21732 0.7 0.29787
Target:  5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3'
miRNA:   3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2703 0.7 0.290655
Target:  5'- cCGCuCGGCAGGUGC-AUGcGCagCGCGCGu -3'
miRNA:   3'- -GCG-GCCGUUCGCGcUACuUG--GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.