miRNA display CGI


Results 121 - 140 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 16581 0.69 0.320345
Target:  5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3'
miRNA:   3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 46700 0.7 0.290655
Target:  5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 2703 0.7 0.290655
Target:  5'- cCGCuCGGCAGGUGC-AUGcGCagCGCGCGu -3'
miRNA:   3'- -GCG-GCCGUUCGCGcUACuUG--GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3344 0.7 0.283578
Target:  5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3'
miRNA:   3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17805 0.69 0.336021
Target:  5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3'
miRNA:   3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19913 0.69 0.320345
Target:  5'- aCGCCGGCAacGGCauGCaGAaGGcGCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCG--CG-CUaCU-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27276 0.69 0.336021
Target:  5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3'
miRNA:   3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 23570 0.67 0.42254
Target:  5'- aGCCGGCAGGCaCGA---ACC-CGCa -3'
miRNA:   3'- gCGGCCGUUCGcGCUacuUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28420 0.77 0.095312
Target:  5'- gCGCCGGCAcGCGCG-UGAACgucgcgggcaGCGCGg -3'
miRNA:   3'- -GCGGCCGUuCGCGCuACUUGg---------CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45470 1.1 0.000338
Target:  5'- aCGCCGGCAAGCGCGAUGAACCGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGCUACUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 18908 0.8 0.055751
Target:  5'- gCGCCGGCcuGCGuCGAgcguGACCGCGCGg -3'
miRNA:   3'- -GCGGCCGuuCGC-GCUac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17752 0.77 0.087646
Target:  5'- gCGCCGGCGgcAGCGCG----GCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCGCGCuacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 45119 0.69 0.339223
Target:  5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3'
miRNA:   3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.