miRNA display CGI


Results 161 - 180 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 19913 0.69 0.320345
Target:  5'- aCGCCGGCAacGGCauGCaGAaGGcGCCGCGCu -3'
miRNA:   3'- -GCGGCCGU--UCG--CG-CUaCU-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 9370 0.69 0.328114
Target:  5'- gCGCCGGC-GGCuGCGG-GAAUuucaGCGCGg -3'
miRNA:   3'- -GCGGCCGuUCG-CGCUaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27366 0.69 0.328114
Target:  5'- cCGCCaGCGagcGGCGCGgcGGcgGCCgGCGCGc -3'
miRNA:   3'- -GCGGcCGU---UCGCGCuaCU--UGG-CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 42916 0.69 0.333635
Target:  5'- aCGCCGcGCcuGCagGCGAUGuucaaucaggcgcaAACCGCGCu -3'
miRNA:   3'- -GCGGC-CGuuCG--CGCUAC--------------UUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 17805 0.69 0.336021
Target:  5'- gCGCaUGGCAAG-GCGGccgagGAuGCCGCGCGc -3'
miRNA:   3'- -GCG-GCCGUUCgCGCUa----CU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27276 0.69 0.336021
Target:  5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3'
miRNA:   3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 45119 0.69 0.339223
Target:  5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3'
miRNA:   3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 8035 0.69 0.344067
Target:  5'- uGCgaGGCGuccGCGCcGUGGcGCCGCGCGa -3'
miRNA:   3'- gCGg-CCGUu--CGCGcUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 27545 0.69 0.344067
Target:  5'- gGCCGGCAGGC-CGGgcacGAGCguCGCgGCGa -3'
miRNA:   3'- gCGGCCGUUCGcGCUa---CUUG--GCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 16581 0.69 0.320345
Target:  5'- gGCCGGCGGcGaCGCGuucgccGGGCuCGCGCGc -3'
miRNA:   3'- gCGGCCGUU-C-GCGCua----CUUG-GCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30315 0.69 0.319576
Target:  5'- gGCCGGCGucuuGaCGaCGAUcgauugcGAAUCGCGCGa -3'
miRNA:   3'- gCGGCCGUu---C-GC-GCUA-------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 26197 0.72 0.214558
Target:  5'- cCGCgCGGCGGccGCGCGAUGcggcGGCCGUucGCGa -3'
miRNA:   3'- -GCG-GCCGUU--CGCGCUAC----UUGGCG--CGC- -5'
24116 3' -59.1 NC_005263.2 + 28804 0.72 0.220184
Target:  5'- aGCCGGCGGGcCGCGuuuccaaGAACuCGcCGCGa -3'
miRNA:   3'- gCGGCCGUUC-GCGCua-----CUUG-GC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 24689 0.75 0.136422
Target:  5'- gCGCCGGUAacggcGGCGCGccGAacguGCCGgGCGg -3'
miRNA:   3'- -GCGGCCGU-----UCGCGCuaCU----UGGCgCGC- -5'
24116 3' -59.1 NC_005263.2 + 20873 0.71 0.25663
Target:  5'- gGCCGGC-GGCGCGAUcacgcucacGAGCgGCGg- -3'
miRNA:   3'- gCGGCCGuUCGCGCUA---------CUUGgCGCgc -5'
24116 3' -59.1 NC_005263.2 + 3344 0.7 0.283578
Target:  5'- cCGCCGGCGccgcGCGCGGUcGAGCgaccagacagUGCGCc -3'
miRNA:   3'- -GCGGCCGUu---CGCGCUA-CUUG----------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46700 0.7 0.290655
Target:  5'- cCGUCGGCAAGCGCuacGAGUacaaGCGCGg -3'
miRNA:   3'- -GCGGCCGUUCGCGcuaCUUGg---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 21732 0.7 0.29787
Target:  5'- -aUCGGCAuGCGCGcGUGAuaagAUCGCGCGc -3'
miRNA:   3'- gcGGCCGUuCGCGC-UACU----UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 22511 0.7 0.300795
Target:  5'- -cCCGGCGcacuccguugcgaucAGCGUGAcGGGCgGCGCGg -3'
miRNA:   3'- gcGGCCGU---------------UCGCGCUaCUUGgCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30489 0.69 0.310453
Target:  5'- gCGCCcuGGCGacguuuugaucgucAGCGCGucGUGAccccGCUGCGCGa -3'
miRNA:   3'- -GCGG--CCGU--------------UCGCGC--UACU----UGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.