miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 13362 0.67 0.441387
Target:  5'- uGCgGGC-GGCGCGA--AACaCGCGCc -3'
miRNA:   3'- gCGgCCGuUCGCGCUacUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 694 0.67 0.441387
Target:  5'- uGCCGaGCGcGC-CGAUGAACuCGaCGCa -3'
miRNA:   3'- gCGGC-CGUuCGcGCUACUUG-GC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 20346 0.67 0.412383
Target:  5'- uGCCGccGCAccucgggGGCGCGcAUGGcugAUCGCGCGc -3'
miRNA:   3'- gCGGC--CGU-------UCGCGC-UACU---UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 32879 0.67 0.404185
Target:  5'- uGCCGGCGGGCGgCGA-GuuUCGUgGCGu -3'
miRNA:   3'- gCGGCCGUUCGC-GCUaCuuGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 19676 0.67 0.404185
Target:  5'- gGCCGGUgAAGCucaGCGAUGuGCUGaaaGCGa -3'
miRNA:   3'- gCGGCCG-UUCG---CGCUACuUGGCg--CGC- -5'
24116 3' -59.1 NC_005263.2 + 13754 0.67 0.403281
Target:  5'- uGCCGGUuuacacggcgacAGGCGCGucgcuuaAUGGGCCGCauGCu -3'
miRNA:   3'- gCGGCCG------------UUCGCGC-------UACUUGGCG--CGc -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 39334 0.67 0.441387
Target:  5'- gCGCgGGCcGGCGUcAUccuGCCGCGCa -3'
miRNA:   3'- -GCGgCCGuUCGCGcUAcu-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46977 0.67 0.431903
Target:  5'- aCGCCGuGCGcagcacGGCGCGGacu-UCGCGCGc -3'
miRNA:   3'- -GCGGC-CGU------UCGCGCUacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1418 0.67 0.431903
Target:  5'- uCGUCGGCGcGCGCcgccuuGGCUGCGCGc -3'
miRNA:   3'- -GCGGCCGUuCGCGcuac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 30919 0.67 0.42254
Target:  5'- aGCgCGGCGAcggcguacGCGCGA---GCUGCGCa -3'
miRNA:   3'- gCG-GCCGUU--------CGCGCUacuUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 2655 0.67 0.42254
Target:  5'- gCGCCGggcucgagguGCAGGCGUGcguuGUGGuagcugAUCGCGCGg -3'
miRNA:   3'- -GCGGC----------CGUUCGCGC----UACU------UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23570 0.67 0.42254
Target:  5'- aGCCGGCAGGCaCGA---ACC-CGCa -3'
miRNA:   3'- gCGGCCGUUCGcGCUacuUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.