miRNA display CGI


Results 81 - 100 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 10879 0.68 0.36057
Target:  5'- -cUCGGCAccGGCGCGcgucGUGAGCgGCGUa -3'
miRNA:   3'- gcGGCCGU--UCGCGC----UACUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 1282 0.68 0.35225
Target:  5'- aGUCGGagcGGCGCGAaaGAUCGCGCu -3'
miRNA:   3'- gCGGCCgu-UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27545 0.69 0.344067
Target:  5'- gGCCGGCAGGC-CGGgcacGAGCguCGCgGCGa -3'
miRNA:   3'- gCGGCCGUUCGcGCUa---CUUG--GCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 8035 0.69 0.344067
Target:  5'- uGCgaGGCGuccGCGCcGUGGcGCCGCGCGa -3'
miRNA:   3'- gCGg-CCGUu--CGCGcUACU-UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45119 0.69 0.339223
Target:  5'- gCGCCGGCGAGCGUcuacggcauuccgcuGAcGGGCaucacgcuCGCGCa -3'
miRNA:   3'- -GCGGCCGUUCGCG---------------CUaCUUG--------GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 27276 0.69 0.336021
Target:  5'- gGCCcGacuGCGCGAggccGAGCCGCGCc -3'
miRNA:   3'- gCGGcCguuCGCGCUa---CUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 3312 0.68 0.386342
Target:  5'- gGCgCGGCc-GCGCGGUGuucaacguCUGCGCGn -3'
miRNA:   3'- gCG-GCCGuuCGCGCUACuu------GGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 17334 0.68 0.386342
Target:  5'- gCGCCGGUGgcuucgacguucGGCaucGCGGUcgacgauccGAACCGCGUGa -3'
miRNA:   3'- -GCGGCCGU------------UCG---CGCUA---------CUUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23570 0.67 0.42254
Target:  5'- aGCCGGCAGGCaCGA---ACC-CGCa -3'
miRNA:   3'- gCGGCCGUUCGcGCUacuUGGcGCGc -5'
24116 3' -59.1 NC_005263.2 + 21816 0.67 0.421611
Target:  5'- gGCCGGCGAGCaagccauucucGCGGgcguucaggcUGAucaggucGCCGCGUu -3'
miRNA:   3'- gCGGCCGUUCG-----------CGCU----------ACU-------UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 28077 0.67 0.419755
Target:  5'- aCGCgCGGCAcgaucccguguguuGGCGCGGccGAUCGCGUc -3'
miRNA:   3'- -GCG-GCCGU--------------UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 12871 0.67 0.4133
Target:  5'- gGCCGGCGuGCGUGGUGuggcgacucaGACUGCa-- -3'
miRNA:   3'- gCGGCCGUuCGCGCUAC----------UUGGCGcgc -5'
24116 3' -59.1 NC_005263.2 + 20980 0.67 0.4133
Target:  5'- aGCCGGUAcgGGUuCGGUGcaauucGCCGCGCc -3'
miRNA:   3'- gCGGCCGU--UCGcGCUACu-----UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20346 0.67 0.412383
Target:  5'- uGCCGccGCAccucgggGGCGCGcAUGGcugAUCGCGCGc -3'
miRNA:   3'- gCGGC--CGU-------UCGCGC-UACU---UGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 32879 0.67 0.404185
Target:  5'- uGCCGGCGGGCGgCGA-GuuUCGUgGCGu -3'
miRNA:   3'- gCGGCCGUUCGC-GCUaCuuGGCG-CGC- -5'
24116 3' -59.1 NC_005263.2 + 19676 0.67 0.404185
Target:  5'- gGCCGGUgAAGCucaGCGAUGuGCUGaaaGCGa -3'
miRNA:   3'- gCGGCCG-UUCG---CGCUACuUGGCg--CGC- -5'
24116 3' -59.1 NC_005263.2 + 13754 0.67 0.403281
Target:  5'- uGCCGGUuuacacggcgacAGGCGCGucgcuuaAUGGGCCGCauGCu -3'
miRNA:   3'- gCGGCCG------------UUCGCGC-------UACUUGGCG--CGc -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46912 0.66 0.500609
Target:  5'- aCGCCGG-AAGaaCGCGcu--GCCGCGCa -3'
miRNA:   3'- -GCGGCCgUUC--GCGCuacuUGGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.