miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 5' -53.8 NC_005263.2 + 7208 0.66 0.75675
Target:  5'- aGUCGCGCGAccaucgccGGCGACCagaaggCGCGc -3'
miRNA:   3'- -CAGCGCGUUaac-----CCGCUGGaa----GUGCu -5'
24116 5' -53.8 NC_005263.2 + 20840 0.66 0.75675
Target:  5'- cUCGCGCAGUcGGGCcaauUCgaCGCGAg -3'
miRNA:   3'- cAGCGCGUUAaCCCGcu--GGaaGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 35545 0.66 0.721394
Target:  5'- -gCGCGCGGgcGGGCGcuacggcgccgccgGCCgcCGCGAa -3'
miRNA:   3'- caGCGCGUUaaCCCGC--------------UGGaaGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 9200 0.67 0.691697
Target:  5'- -gUGCGCAAacGGGCGGCgCUcgUACGGc -3'
miRNA:   3'- caGCGCGUUaaCCCGCUG-GAa-GUGCU- -5'
24116 5' -53.8 NC_005263.2 + 10722 0.67 0.669403
Target:  5'- cGUCGCGCAGccaGGGCGACgCagacuCGAg -3'
miRNA:   3'- -CAGCGCGUUaa-CCCGCUG-Gaagu-GCU- -5'
24116 5' -53.8 NC_005263.2 + 27794 0.67 0.669403
Target:  5'- uUCGCGCGGUacaucgccgucgUGaucgcGGCGucACCUUCGCGGc -3'
miRNA:   3'- cAGCGCGUUA------------AC-----CCGC--UGGAAGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 28077 0.68 0.654828
Target:  5'- -aCGCGCGgcacgaucccguguGUUGGcGCGGCCgaUCGCGu -3'
miRNA:   3'- caGCGCGU--------------UAACC-CGCUGGa-AGUGCu -5'
24116 5' -53.8 NC_005263.2 + 8957 0.68 0.613222
Target:  5'- cGUCGCGCAugucaGCGucguuguauCCUUCACGAg -3'
miRNA:   3'- -CAGCGCGUuaaccCGCu--------GGAAGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 28971 0.69 0.579635
Target:  5'- uGUCGCGgAAUUcGGGCGcaugcugcuGCCagaUCGCGAg -3'
miRNA:   3'- -CAGCGCgUUAA-CCCGC---------UGGa--AGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 45896 0.7 0.534434
Target:  5'- aUCGCGCAggggcgaaagaccAgaugUGGGCGACCgaaggCugGGc -3'
miRNA:   3'- cAGCGCGU-------------Ua---ACCCGCUGGaa---GugCU- -5'
24116 5' -53.8 NC_005263.2 + 47474 0.7 0.513901
Target:  5'- cGUCGCGUAGcguGGCGACCUaCACc- -3'
miRNA:   3'- -CAGCGCGUUaacCCGCUGGAaGUGcu -5'
24116 5' -53.8 NC_005263.2 + 36172 0.7 0.513901
Target:  5'- -cUGCGCGAccGGuGCGACCUUCAaCGc -3'
miRNA:   3'- caGCGCGUUaaCC-CGCUGGAAGU-GCu -5'
24116 5' -53.8 NC_005263.2 + 25194 0.7 0.513901
Target:  5'- -gCGCGCAGcUUGGGC-ACCUccguccggCACGAa -3'
miRNA:   3'- caGCGCGUU-AACCCGcUGGAa-------GUGCU- -5'
24116 5' -53.8 NC_005263.2 + 26816 0.71 0.471802
Target:  5'- cGUCGCGUAGUUGGcGCccauGACCUgCcCGAg -3'
miRNA:   3'- -CAGCGCGUUAACC-CG----CUGGAaGuGCU- -5'
24116 5' -53.8 NC_005263.2 + 36653 0.71 0.467687
Target:  5'- --aGCGCGAgcucggcuugcaUUGGGCGACCUggcagcauucgagCGCGGg -3'
miRNA:   3'- cagCGCGUU------------AACCCGCUGGAa------------GUGCU- -5'
24116 5' -53.8 NC_005263.2 + 30451 0.72 0.412147
Target:  5'- --aGCGUGAgcGcGGCGGCCUUCGCGu -3'
miRNA:   3'- cagCGCGUUaaC-CCGCUGGAAGUGCu -5'
24116 5' -53.8 NC_005263.2 + 3777 0.73 0.375063
Target:  5'- cGUCGCGUuc-UGGuCGGCCUUUGCGAu -3'
miRNA:   3'- -CAGCGCGuuaACCcGCUGGAAGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 21431 0.74 0.292655
Target:  5'- -gUGCGCAucaaUGGGCGGCCgUCGCGc -3'
miRNA:   3'- caGCGCGUua--ACCCGCUGGaAGUGCu -5'
24116 5' -53.8 NC_005263.2 + 39032 0.78 0.180993
Target:  5'- gGUCGCGCuGUUcggcacGGGCGACuuCUUCGCGAa -3'
miRNA:   3'- -CAGCGCGuUAA------CCCGCUG--GAAGUGCU- -5'
24116 5' -53.8 NC_005263.2 + 26208 0.78 0.171233
Target:  5'- -cCGCGCGAUgcGGCGGCCgUUCGCGAa -3'
miRNA:   3'- caGCGCGUUAacCCGCUGG-AAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.