miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 10848 0.68 0.37266
Target:  5'- cGUugGUGCGgGCUacggcgucgcggcgGAaCuCGGCaCCGGCg -3'
miRNA:   3'- -CGugCAUGCgCGA--------------CUaG-GCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 3320 0.68 0.366723
Target:  5'- cGCGCGguguucaacgucUGCGCGCcg--CCGGCgCCGcGCg -3'
miRNA:   3'- -CGUGC------------AUGCGCGacuaGGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 30930 0.68 0.358355
Target:  5'- -gGCGUACGCGCgagcugcgcAUUCGGCUucuCGGCc -3'
miRNA:   3'- cgUGCAUGCGCGac-------UAGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 10382 0.68 0.358355
Target:  5'- aGC-CGccACGCGCcGggCCGGCC-GGCg -3'
miRNA:   3'- -CGuGCa-UGCGCGaCuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 24457 0.68 0.374368
Target:  5'- gGCACGgcgaaggguuuccUACGCGCgacGAgcUCCGGCUCGa- -3'
miRNA:   3'- -CGUGC-------------AUGCGCGa--CU--AGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 36451 0.68 0.358355
Target:  5'- -aACGU-CGCGCUGAUCC-GCUCGa- -3'
miRNA:   3'- cgUGCAuGCGCGACUAGGcCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 43913 0.67 0.410536
Target:  5'- cGCGCGUAC-UGCUucacguUCCGacuGCCUGGCa -3'
miRNA:   3'- -CGUGCAUGcGCGAcu----AGGC---CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19067 0.67 0.410536
Target:  5'- cGCGCGgccugcGCGCGCUGGUgCgucuugcaGGgCUGGCc -3'
miRNA:   3'- -CGUGCa-----UGCGCGACUAgG--------CCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14147 0.67 0.419681
Target:  5'- aGCGCGgcCGCcUUGGcgacUUCGGgCCGGCg -3'
miRNA:   3'- -CGUGCauGCGcGACU----AGGCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37927 0.67 0.457457
Target:  5'- gGCGCagGCGCGCcg--CCGGCagCCGGUg -3'
miRNA:   3'- -CGUGcaUGCGCGacuaGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 10420 0.67 0.418761
Target:  5'- cGCGCGUucaacgaACGC-CUGAUCCGG-CgGGa -3'
miRNA:   3'- -CGUGCA-------UGCGcGACUAGGCCgGgCCg -5'
24118 5' -59.2 NC_005263.2 + 6748 0.67 0.44784
Target:  5'- cGCGCGUcacguccaucGCGCGCcGGg-CGaGCUCGGCc -3'
miRNA:   3'- -CGUGCA----------UGCGCGaCUagGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17378 0.67 0.419681
Target:  5'- cCGCGUGaa-GCUGucugCCGGCgCGGCc -3'
miRNA:   3'- cGUGCAUgcgCGACua--GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19290 0.67 0.428017
Target:  5'- cCGCGUGCGCGUcacGGUCaccgugaCGcGCCCGGa -3'
miRNA:   3'- cGUGCAUGCGCGa--CUAG-------GC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 22590 0.67 0.428949
Target:  5'- uGCGgGUGCG-GCUucUCCGGUCagGGCa -3'
miRNA:   3'- -CGUgCAUGCgCGAcuAGGCCGGg-CCG- -5'
24118 5' -59.2 NC_005263.2 + 16055 0.67 0.438336
Target:  5'- aCACGguggAUGCGaa-GUCCGGCCCGa- -3'
miRNA:   3'- cGUGCa---UGCGCgacUAGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 18937 0.67 0.438336
Target:  5'- gGCACGa--GCGCUcGAgcgcgCCGGUucgagcgcagCCGGCa -3'
miRNA:   3'- -CGUGCaugCGCGA-CUa----GGCCG----------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 9015 0.67 0.438336
Target:  5'- cGCGCGUACuCGCc-GUCCGGCUCa-- -3'
miRNA:   3'- -CGUGCAUGcGCGacUAGGCCGGGccg -5'
24118 5' -59.2 NC_005263.2 + 24067 0.67 0.44784
Target:  5'- aGCGCGaacccggacACGuCGaCcGAUCCGGCCggCGGCg -3'
miRNA:   3'- -CGUGCa--------UGC-GC-GaCUAGGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 33148 0.67 0.428949
Target:  5'- uGCuguCGUucccCGCGCUGAacgaUCCGGaucagaUCGGCu -3'
miRNA:   3'- -CGu--GCAu---GCGCGACU----AGGCCg-----GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.