miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 30775 0.66 0.496979
Target:  5'- cGCACGacuuccuCGCGCaUGcgCUGcuGCUCGGCg -3'
miRNA:   3'- -CGUGCau-----GCGCG-ACuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30622 0.69 0.318549
Target:  5'- gGCAUGU-CGaggauGCUGcgCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCAuGCg----CGACuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 30457 0.69 0.342024
Target:  5'- aGCGCGgcggccuuCGCGUUGcgccacAUCCGGCgccCUGGCg -3'
miRNA:   3'- -CGUGCau------GCGCGAC------UAGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30355 0.77 0.103703
Target:  5'- aGCGCGgcCGCGCUGccgCCGGCgCCGaGUg -3'
miRNA:   3'- -CGUGCauGCGCGACua-GGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 29352 0.69 0.350122
Target:  5'- cCGgGUGCGCGagcagGcgCCGGuaaCCCGGCg -3'
miRNA:   3'- cGUgCAUGCGCga---CuaGGCC---GGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28914 0.71 0.251662
Target:  5'- uGCGC---CGCGCUGAUCCGucccaucaguuccucGCCaCGGCc -3'
miRNA:   3'- -CGUGcauGCGCGACUAGGC---------------CGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 28431 0.73 0.173463
Target:  5'- aGCACau---CGCUGAgcuucaCCGGCCCGGCa -3'
miRNA:   3'- -CGUGcaugcGCGACUa-----GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28062 0.7 0.296306
Target:  5'- aGCGCGUcgcacucaACGCGCggcacGAUCCcguguguuGGCgCGGCc -3'
miRNA:   3'- -CGUGCA--------UGCGCGa----CUAGG--------CCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27924 0.66 0.467183
Target:  5'- gGCGCGUcgcccgGCGCGCucucgucgaUGAgCCGGa-CGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCG---------ACUaGGCCggGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27678 0.7 0.296306
Target:  5'- aGCACGgcCGCcuucuuguGC-GcgCCGGCgCCGGCg -3'
miRNA:   3'- -CGUGCauGCG--------CGaCuaGGCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27378 0.78 0.07854
Target:  5'- gGCGCGgcggcggccgGCGCGCUGA-CCGGCugcgucacgaCCGGCg -3'
miRNA:   3'- -CGUGCa---------UGCGCGACUaGGCCG----------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27373 0.68 0.389101
Target:  5'- -gACGaguagGCGCGCUucguugccgaCGGCCCGGCc -3'
miRNA:   3'- cgUGCa----UGCGCGAcuag------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27319 0.7 0.303583
Target:  5'- gGCGCGacccgACGCGCcgacGAUCagCGGCgCGGCc -3'
miRNA:   3'- -CGUGCa----UGCGCGa---CUAG--GCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 26812 0.66 0.51731
Target:  5'- cGCACGU-CGCGUaguuggcgcccaUGA-CCuGCCCGaGCc -3'
miRNA:   3'- -CGUGCAuGCGCG------------ACUaGGcCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 26696 0.78 0.087816
Target:  5'- cGCACGUaAUGCGCcGAgcaggCCGGCCugCGGCa -3'
miRNA:   3'- -CGUGCA-UGCGCGaCUa----GGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 25772 0.69 0.341222
Target:  5'- -uGCGUcgagaagcagcccGCGCGCUGAgcgugCCGGCauaaaucaaaCGGCc -3'
miRNA:   3'- cgUGCA-------------UGCGCGACUa----GGCCGg---------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 24975 0.71 0.249142
Target:  5'- gGCAac-ACGaUGCUGG-CCGGCCUGGCc -3'
miRNA:   3'- -CGUgcaUGC-GCGACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 24457 0.68 0.374368
Target:  5'- gGCACGgcgaaggguuuccUACGCGCgacGAgcUCCGGCUCGa- -3'
miRNA:   3'- -CGUGC-------------AUGCGCGa--CU--AGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 24067 0.67 0.44784
Target:  5'- aGCGCGaacccggacACGuCGaCcGAUCCGGCCggCGGCg -3'
miRNA:   3'- -CGUGCa--------UGC-GC-GaCUAGGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 23610 0.69 0.341222
Target:  5'- -gACGUACGCGCc-GUUCGGCUuccgcacgaugaaCGGCg -3'
miRNA:   3'- cgUGCAUGCGCGacUAGGCCGG-------------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.