miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 45692 0.66 0.506085
Target:  5'- gGCACGcUGC-CGCUGua-CGGCgaccaagcgaccgCCGGCg -3'
miRNA:   3'- -CGUGC-AUGcGCGACuagGCCG-------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37371 0.7 0.268552
Target:  5'- uGCGCGUGCGCGaCUGcAUCUuGUCgaCGGCu -3'
miRNA:   3'- -CGUGCAUGCGC-GAC-UAGGcCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 19290 0.67 0.428017
Target:  5'- cCGCGUGCGCGUcacGGUCaccgugaCGcGCCCGGa -3'
miRNA:   3'- cGUGCAUGCGCGa--CUAG-------GC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 16498 0.66 0.467183
Target:  5'- cGCGCGgcCGuCGC-GA-CCGGCaugaccaaCCGGCa -3'
miRNA:   3'- -CGUGCauGC-GCGaCUaGGCCG--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 39024 0.66 0.467183
Target:  5'- gGUAUGccgguCGCGCUG-UUCGGCaCgGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGACuAGGCCG-GgCCG- -5'
24118 5' -59.2 NC_005263.2 + 22590 0.67 0.428949
Target:  5'- uGCGgGUGCG-GCUucUCCGGUCagGGCa -3'
miRNA:   3'- -CGUgCAUGCgCGAcuAGGCCGGg-CCG- -5'
24118 5' -59.2 NC_005263.2 + 1556 0.69 0.318549
Target:  5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3'
miRNA:   3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 17537 0.69 0.310998
Target:  5'- gGCAaacggUGUGCGCGa--AUCCGGUCUGGUg -3'
miRNA:   3'- -CGU-----GCAUGCGCgacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27319 0.7 0.303583
Target:  5'- gGCGCGacccgACGCGCcgacGAUCagCGGCgCGGCc -3'
miRNA:   3'- -CGUGCa----UGCGCGa---CUAG--GCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17088 0.7 0.296306
Target:  5'- cGCACGccGCGCcucgccgcacuGCUGcacgaucuggcGUCCGGCCUGGg -3'
miRNA:   3'- -CGUGCa-UGCG-----------CGAC-----------UAGGCCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 35518 0.7 0.296306
Target:  5'- aCACugGCGCGCcGA-CUGcGCCCGGCg -3'
miRNA:   3'- cGUGcaUGCGCGaCUaGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 32822 0.7 0.296306
Target:  5'- cGCACGUAU-CGCUGAUC-GGCUUuaagGGCg -3'
miRNA:   3'- -CGUGCAUGcGCGACUAGgCCGGG----CCG- -5'
24118 5' -59.2 NC_005263.2 + 28062 0.7 0.296306
Target:  5'- aGCGCGUcgcacucaACGCGCggcacGAUCCcguguguuGGCgCGGCc -3'
miRNA:   3'- -CGUGCA--------UGCGCGa----CUAGG--------CCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27678 0.7 0.296306
Target:  5'- aGCACGgcCGCcuucuuguGC-GcgCCGGCgCCGGCg -3'
miRNA:   3'- -CGUGCauGCG--------CGaCuaGGCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 36149 0.7 0.288458
Target:  5'- aGUACGggcGCGCGCUcgaggcgaacgucGAUaCCGGCC-GGCu -3'
miRNA:   3'- -CGUGCa--UGCGCGA-------------CUA-GGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 24975 0.71 0.249142
Target:  5'- gGCAac-ACGaUGCUGG-CCGGCCUGGCc -3'
miRNA:   3'- -CGUgcaUGC-GCGACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 2674 0.71 0.248515
Target:  5'- -gGCGUGCGUugugguaGCUGAUCgcgCGGCCgcuCGGCa -3'
miRNA:   3'- cgUGCAUGCG-------CGACUAG---GCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 22210 0.72 0.225082
Target:  5'- uUACGUACGuCGCggccgucgccgGcgUCGGCCCGGUu -3'
miRNA:   3'- cGUGCAUGC-GCGa----------CuaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 8810 0.72 0.219383
Target:  5'- cGCGCGcAUGCGCcug-CCGGCCgcuCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuaGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 32736 0.73 0.187731
Target:  5'- uGCaACGUACGCGCUGccgCUuGCgCGGCg -3'
miRNA:   3'- -CG-UGCAUGCGCGACua-GGcCGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.