Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24118 | 5' | -59.2 | NC_005263.2 | + | 36451 | 0.68 | 0.358355 |
Target: 5'- -aACGU-CGCGCUGAUCC-GCUCGa- -3' miRNA: 3'- cgUGCAuGCGCGACUAGGcCGGGCcg -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 27319 | 0.7 | 0.303583 |
Target: 5'- gGCGCGacccgACGCGCcgacGAUCagCGGCgCGGCc -3' miRNA: 3'- -CGUGCa----UGCGCGa---CUAG--GCCGgGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 17088 | 0.7 | 0.296306 |
Target: 5'- cGCACGccGCGCcucgccgcacuGCUGcacgaucuggcGUCCGGCCUGGg -3' miRNA: 3'- -CGUGCa-UGCG-----------CGAC-----------UAGGCCGGGCCg -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 35518 | 0.7 | 0.296306 |
Target: 5'- aCACugGCGCGCcGA-CUGcGCCCGGCg -3' miRNA: 3'- cGUGcaUGCGCGaCUaGGC-CGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 32822 | 0.7 | 0.296306 |
Target: 5'- cGCACGUAU-CGCUGAUC-GGCUUuaagGGCg -3' miRNA: 3'- -CGUGCAUGcGCGACUAGgCCGGG----CCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 28062 | 0.7 | 0.296306 |
Target: 5'- aGCGCGUcgcacucaACGCGCggcacGAUCCcguguguuGGCgCGGCc -3' miRNA: 3'- -CGUGCA--------UGCGCGa----CUAGG--------CCGgGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 27678 | 0.7 | 0.296306 |
Target: 5'- aGCACGgcCGCcuucuuguGC-GcgCCGGCgCCGGCg -3' miRNA: 3'- -CGUGCauGCG--------CGaCuaGGCCG-GGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 36149 | 0.7 | 0.288458 |
Target: 5'- aGUACGggcGCGCGCUcgaggcgaacgucGAUaCCGGCC-GGCu -3' miRNA: 3'- -CGUGCa--UGCGCGA-------------CUA-GGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 37371 | 0.7 | 0.268552 |
Target: 5'- uGCGCGUGCGCGaCUGcAUCUuGUCgaCGGCu -3' miRNA: 3'- -CGUGCAUGCGC-GAC-UAGGcCGG--GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 17537 | 0.69 | 0.310998 |
Target: 5'- gGCAaacggUGUGCGCGa--AUCCGGUCUGGUg -3' miRNA: 3'- -CGU-----GCAUGCGCgacUAGGCCGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 1556 | 0.69 | 0.318549 |
Target: 5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3' miRNA: 3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 30622 | 0.69 | 0.318549 |
Target: 5'- gGCAUGU-CGaggauGCUGcgCCGGCC-GGCg -3' miRNA: 3'- -CGUGCAuGCg----CGACuaGGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 45779 | 0.69 | 0.353399 |
Target: 5'- cGCACGgugcuCGCGUUccgccaguucaacgcGGgcgugCCGGCCaCGGCg -3' miRNA: 3'- -CGUGCau---GCGCGA---------------CUa----GGCCGG-GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 35790 | 0.69 | 0.350122 |
Target: 5'- gGCGauUACGUGCUGGcgCC-GCUCGGCa -3' miRNA: 3'- -CGUgcAUGCGCGACUa-GGcCGGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 29352 | 0.69 | 0.350122 |
Target: 5'- cCGgGUGCGCGagcagGcgCCGGuaaCCCGGCg -3' miRNA: 3'- cGUgCAUGCGCga---CuaGGCC---GGGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 30457 | 0.69 | 0.342024 |
Target: 5'- aGCGCGgcggccuuCGCGUUGcgccacAUCCGGCgccCUGGCg -3' miRNA: 3'- -CGUGCau------GCGCGAC------UAGGCCG---GGCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 23610 | 0.69 | 0.341222 |
Target: 5'- -gACGUACGCGCc-GUUCGGCUuccgcacgaugaaCGGCg -3' miRNA: 3'- cgUGCAUGCGCGacUAGGCCGG-------------GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 25772 | 0.69 | 0.341222 |
Target: 5'- -uGCGUcgagaagcagcccGCGCGCUGAgcgugCCGGCauaaaucaaaCGGCc -3' miRNA: 3'- cgUGCA-------------UGCGCGACUa----GGCCGg---------GCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 38231 | 0.69 | 0.334062 |
Target: 5'- aGCAUGaaaGCGCcgaggacaacgaGCUGaAUCCGGCC-GGCg -3' miRNA: 3'- -CGUGCa--UGCG------------CGAC-UAGGCCGGgCCG- -5' |
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24118 | 5' | -59.2 | NC_005263.2 | + | 18802 | 0.69 | 0.334062 |
Target: 5'- cGCGCGcgAUGCGCaug-CCGaCCCGGCc -3' miRNA: 3'- -CGUGCa-UGCGCGacuaGGCcGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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