miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 36149 0.7 0.288458
Target:  5'- aGUACGggcGCGCGCUcgaggcgaacgucGAUaCCGGCC-GGCu -3'
miRNA:   3'- -CGUGCa--UGCGCGA-------------CUA-GGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 37371 0.7 0.268552
Target:  5'- uGCGCGUGCGCGaCUGcAUCUuGUCgaCGGCu -3'
miRNA:   3'- -CGUGCAUGCGC-GAC-UAGGcCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 24975 0.71 0.249142
Target:  5'- gGCAac-ACGaUGCUGG-CCGGCCUGGCc -3'
miRNA:   3'- -CGUgcaUGC-GCGACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 2674 0.71 0.248515
Target:  5'- -gGCGUGCGUugugguaGCUGAUCgcgCGGCCgcuCGGCa -3'
miRNA:   3'- cgUGCAUGCG-------CGACUAG---GCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 22210 0.72 0.225082
Target:  5'- uUACGUACGuCGCggccgucgccgGcgUCGGCCCGGUu -3'
miRNA:   3'- cGUGCAUGC-GCGa----------CuaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 1556 0.69 0.318549
Target:  5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3'
miRNA:   3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 30622 0.69 0.318549
Target:  5'- gGCAUGU-CGaggauGCUGcgCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCAuGCg----CGACuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38231 0.69 0.334062
Target:  5'- aGCAUGaaaGCGCcgaggacaacgaGCUGaAUCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCa--UGCG------------CGAC-UAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 24457 0.68 0.374368
Target:  5'- gGCACGgcgaaggguuuccUACGCGCgacGAgcUCCGGCUCGa- -3'
miRNA:   3'- -CGUGC-------------AUGCGCGa--CU--AGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 10848 0.68 0.37266
Target:  5'- cGUugGUGCGgGCUacggcgucgcggcgGAaCuCGGCaCCGGCg -3'
miRNA:   3'- -CGugCAUGCgCGA--------------CUaG-GCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 3320 0.68 0.366723
Target:  5'- cGCGCGguguucaacgucUGCGCGCcg--CCGGCgCCGcGCg -3'
miRNA:   3'- -CGUGC------------AUGCGCGacuaGGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 30930 0.68 0.358355
Target:  5'- -gGCGUACGCGCgagcugcgcAUUCGGCUucuCGGCc -3'
miRNA:   3'- cgUGCAUGCGCGac-------UAGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 10382 0.68 0.358355
Target:  5'- aGC-CGccACGCGCcGggCCGGCC-GGCg -3'
miRNA:   3'- -CGuGCa-UGCGCGaCuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 36451 0.68 0.358355
Target:  5'- -aACGU-CGCGCUGAUCC-GCUCGa- -3'
miRNA:   3'- cgUGCAuGCGCGACUAGGcCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 45779 0.69 0.353399
Target:  5'- cGCACGgugcuCGCGUUccgccaguucaacgcGGgcgugCCGGCCaCGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGA---------------CUa----GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 35790 0.69 0.350122
Target:  5'- gGCGauUACGUGCUGGcgCC-GCUCGGCa -3'
miRNA:   3'- -CGUgcAUGCGCGACUa-GGcCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 29352 0.69 0.350122
Target:  5'- cCGgGUGCGCGagcagGcgCCGGuaaCCCGGCg -3'
miRNA:   3'- cGUgCAUGCGCga---CuaGGCC---GGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30457 0.69 0.342024
Target:  5'- aGCGCGgcggccuuCGCGUUGcgccacAUCCGGCgccCUGGCg -3'
miRNA:   3'- -CGUGCau------GCGCGAC------UAGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23610 0.69 0.341222
Target:  5'- -gACGUACGCGCc-GUUCGGCUuccgcacgaugaaCGGCg -3'
miRNA:   3'- cgUGCAUGCGCGacUAGGCCGG-------------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 25772 0.69 0.341222
Target:  5'- -uGCGUcgagaagcagcccGCGCGCUGAgcgugCCGGCauaaaucaaaCGGCc -3'
miRNA:   3'- cgUGCA-------------UGCGCGACUa----GGCCGg---------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.