miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 5' -66 NC_005263.2 + 45486 0.66 0.212816
Target:  5'- uGAaCCGCGCgGUCGGCCUGUCgCG-Ca -3'
miRNA:   3'- uCUgGGCGCG-CGGCCGGACGG-GCaGc -5'
24121 5' -66 NC_005263.2 + 38609 0.66 0.211235
Target:  5'- -aGCCCGCgcacgcgauggauaGCGCCGGCgCgaaugaaGCCgCGUCGc -3'
miRNA:   3'- ucUGGGCG--------------CGCGGCCG-Ga------CGG-GCAGC- -5'
24121 5' -66 NC_005263.2 + 47553 0.66 0.207587
Target:  5'- aAGGCCUGCGCGCCcugaacguGCaagGCUaCGUCGa -3'
miRNA:   3'- -UCUGGGCGCGCGGc-------CGga-CGG-GCAGC- -5'
24121 5' -66 NC_005263.2 + 9026 0.66 0.207587
Target:  5'- cGugCCGCGCGaCGGCgaGCCggcuacgaCGUCc -3'
miRNA:   3'- uCugGGCGCGCgGCCGgaCGG--------GCAGc -5'
24121 5' -66 NC_005263.2 + 27293 0.66 0.20707
Target:  5'- -uACCUGcCGCGCCGGCCaggaacuUGaCCCauugcGUCGg -3'
miRNA:   3'- ucUGGGC-GCGCGGCCGG-------AC-GGG-----CAGC- -5'
24121 5' -66 NC_005263.2 + 23914 0.66 0.20604
Target:  5'- -cGCCCGCgaGCGUgaccgucgcuuuggCGGCUUGCgCGUCGu -3'
miRNA:   3'- ucUGGGCG--CGCG--------------GCCGGACGgGCAGC- -5'
24121 5' -66 NC_005263.2 + 33733 0.67 0.20247
Target:  5'- cGGACgaGCgGC-CCGGCaucggGCCCGUCGu -3'
miRNA:   3'- -UCUGggCG-CGcGGCCGga---CGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 27388 0.67 0.20247
Target:  5'- cGGCCgGCGCGCUGaCCgGCUgCGUCa -3'
miRNA:   3'- uCUGGgCGCGCGGCcGGaCGG-GCAGc -5'
24121 5' -66 NC_005263.2 + 46235 0.67 0.20247
Target:  5'- aAGGCUgcaaGCGCGCCGGUg-GUCUGUCc -3'
miRNA:   3'- -UCUGGg---CGCGCGGCCGgaCGGGCAGc -5'
24121 5' -66 NC_005263.2 + 20458 0.67 0.20247
Target:  5'- uGAUCCGCGaaauccauaCGGCaacGCCCGUCGa -3'
miRNA:   3'- uCUGGGCGCgcg------GCCGga-CGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 24796 0.67 0.200454
Target:  5'- cGGugCCGCcCGCCuGGCCgccguaaaacggcGCCUGUCc -3'
miRNA:   3'- -UCugGGCGcGCGG-CCGGa------------CGGGCAGc -5'
24121 5' -66 NC_005263.2 + 31024 0.67 0.199952
Target:  5'- -cGCCCGgGCaccagaucaagcaGUCGGCCgugccgaacagucGCCCGUCGa -3'
miRNA:   3'- ucUGGGCgCG-------------CGGCCGGa------------CGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 2760 0.67 0.197462
Target:  5'- cGGCCgC-CGUGCCGGUCgUGUUCGUCa -3'
miRNA:   3'- uCUGG-GcGCGCGGCCGG-ACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 14372 0.67 0.197462
Target:  5'- cGGGCCCGa-UGCCgGGCC-GCUCGUCc -3'
miRNA:   3'- -UCUGGGCgcGCGG-CCGGaCGGGCAGc -5'
24121 5' -66 NC_005263.2 + 14065 0.67 0.192563
Target:  5'- -cGCauugaGCGCGCCGcGCCgGCCCauGUCGg -3'
miRNA:   3'- ucUGgg---CGCGCGGC-CGGaCGGG--CAGC- -5'
24121 5' -66 NC_005263.2 + 26138 0.67 0.192563
Target:  5'- cAGAUCUGCGCGCgCagcauGCCUGCgUCGUUGu -3'
miRNA:   3'- -UCUGGGCGCGCG-Gc----CGGACG-GGCAGC- -5'
24121 5' -66 NC_005263.2 + 7644 0.67 0.192563
Target:  5'- uGuCCCGCuuaguaggagugGCGUugCGGCCuuUGCCCGUCu -3'
miRNA:   3'- uCuGGGCG------------CGCG--GCCGG--ACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 41242 0.67 0.187771
Target:  5'- cGACUCGUGCGCgaGGgCUaCCUGUCGc -3'
miRNA:   3'- uCUGGGCGCGCGg-CCgGAcGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 39712 0.67 0.183084
Target:  5'- gAGGCggCGCGCuuccugGUCGGCCUGCCUG-CGc -3'
miRNA:   3'- -UCUGg-GCGCG------CGGCCGGACGGGCaGC- -5'
24121 5' -66 NC_005263.2 + 23505 0.67 0.178501
Target:  5'- uGACCUGCGcCGCCaccGCCUgcGCCCGa-- -3'
miRNA:   3'- uCUGGGCGC-GCGGc--CGGA--CGGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.