miRNA: 3'- -GCCuUAAGCGCUG-CCAUCG------CUGCGGC- -5'
miRNA: 3'- gccuUAAGCGCUGCCa-UCGCUGCGGC- -5'
miRNA: 3'- -GCCUUAAGCGCUGCCAUCgCUGCGGC- -5'
Results 41 - 43 of 43 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24122 | 3' | -55.2 | NC_005263.2 | + | 18618 | 0.79 | 0.141808 |
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Target: 5'- gCGGcGUUCGCGGCaGGUGGCaacccgGGCGCCGc -3' miRNA: 3'- -GCCuUAAGCGCUG-CCAUCG------CUGCGGC- -5' |
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| 24122 | 3' | -55.2 | NC_005263.2 | + | 12545 | 0.8 | 0.116763 |
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Target: 5'- ---cGUUCGCGGCGGccGGCGGCGCCGu -3' miRNA: 3'- gccuUAAGCGCUGCCa-UCGCUGCGGC- -5' |
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| 24122 | 3' | -55.2 | NC_005263.2 | + | 42896 | 0.97 | 0.007762 |
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Target: 5'- cCGGAAUUCGCGACGGUAG-GACGCCGc -3' miRNA: 3'- -GCCUUAAGCGCUGCCAUCgCUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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