miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 5' -49.8 NC_005263.2 + 42929 1.12 0.002214
Target:  5'- aGGCGAUGUUCAAUCAGGCGCAAACCGc -3'
miRNA:   3'- -CCGCUACAAGUUAGUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 27150 0.77 0.383154
Target:  5'- cGGCGAUGUcCGA-CAGcGCGCGcGCCGu -3'
miRNA:   3'- -CCGCUACAaGUUaGUC-CGCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3322 0.72 0.66389
Target:  5'- cGCGGUGUUCAacGUCuGcGCGCc-GCCGg -3'
miRNA:   3'- cCGCUACAAGU--UAGuC-CGCGuuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 5251 0.66 0.943724
Target:  5'- aGGCGccGUcaUCAG-CGGGCGguG-CCGg -3'
miRNA:   3'- -CCGCuaCA--AGUUaGUCCGCguUuGGC- -5'
24122 5' -49.8 NC_005263.2 + 40948 0.66 0.943724
Target:  5'- cGGCGAUGgccgcgCAAUaGGGuCGCuugacauAGCCGu -3'
miRNA:   3'- -CCGCUACaa----GUUAgUCC-GCGu------UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 27527 0.66 0.938505
Target:  5'- cGCGGUGcccgUCGG-CAcGGCcgGCAGGCCGg -3'
miRNA:   3'- cCGCUACa---AGUUaGU-CCG--CGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 42775 0.66 0.932986
Target:  5'- cGGCGgcGUgaCGAUCcagcgcgaAGGCGCGAaagacccgaacGCCGa -3'
miRNA:   3'- -CCGCuaCAa-GUUAG--------UCCGCGUU-----------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 35540 0.67 0.907886
Target:  5'- cGGCGgcGcgCGggCGGGCGCuacggcGCCGc -3'
miRNA:   3'- -CCGCuaCaaGUuaGUCCGCGuu----UGGC- -5'
24122 5' -49.8 NC_005263.2 + 10629 0.67 0.90581
Target:  5'- cGGCGccGUUCGucacgccgCAGuacacauggacgccGCGCAGACCGc -3'
miRNA:   3'- -CCGCuaCAAGUua------GUC--------------CGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 15313 0.67 0.893542
Target:  5'- aGCGAgcUGcgCG---AGGCGCGGGCCGa -3'
miRNA:   3'- cCGCU--ACaaGUuagUCCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 7163 0.67 0.885933
Target:  5'- uGGUGcAUGcgaUCuuUCAuGCGCAAGCCGg -3'
miRNA:   3'- -CCGC-UACa--AGuuAGUcCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 40009 0.68 0.87804
Target:  5'- cGGCGAUGUcCGAUCuGaGCaagaCGAACCa -3'
miRNA:   3'- -CCGCUACAaGUUAGuC-CGc---GUUUGGc -5'
24122 5' -49.8 NC_005263.2 + 1397 0.68 0.87804
Target:  5'- aGCGG-GUUCGAUUAuugcuugucgucGGCGCGcGCCGc -3'
miRNA:   3'- cCGCUaCAAGUUAGU------------CCGCGUuUGGC- -5'
24122 5' -49.8 NC_005263.2 + 3235 0.68 0.869869
Target:  5'- gGGCGAcga-CAggUAGGCGCGAucGCCGc -3'
miRNA:   3'- -CCGCUacaaGUuaGUCCGCGUU--UGGC- -5'
24122 5' -49.8 NC_005263.2 + 39692 0.68 0.858844
Target:  5'- cGCGAUGgggCGAgcgCGagcuggaaauggccGGCGCGGGCCGc -3'
miRNA:   3'- cCGCUACaa-GUUa--GU--------------CCGCGUUUGGC- -5'
24122 5' -49.8 NC_005263.2 + 29974 0.69 0.815482
Target:  5'- cGGCGGgcaGcgCGAUCAGcGCGUAGaacucgGCCGg -3'
miRNA:   3'- -CCGCUa--CaaGUUAGUC-CGCGUU------UGGC- -5'
24122 5' -49.8 NC_005263.2 + 44283 0.69 0.794535
Target:  5'- uGGgGAuggguuacgucccUGUUCGAUCcGGCGCucGCCu -3'
miRNA:   3'- -CCgCU-------------ACAAGUUAGuCCGCGuuUGGc -5'
24122 5' -49.8 NC_005263.2 + 34458 0.7 0.779066
Target:  5'- cGCGGUGcgCAcgaccgucauccaugAUCAGGCGUucGGCCGc -3'
miRNA:   3'- cCGCUACaaGU---------------UAGUCCGCGu-UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 28989 0.7 0.764288
Target:  5'- cGGCGAUGcgC--UC-GGCGCGgccGACCGg -3'
miRNA:   3'- -CCGCUACaaGuuAGuCCGCGU---UUGGC- -5'
24122 5' -49.8 NC_005263.2 + 17417 0.7 0.742681
Target:  5'- gGGCGGUG-UCg--CAGGUGCAAcagcgGCCa -3'
miRNA:   3'- -CCGCUACaAGuuaGUCCGCGUU-----UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.