Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24123 | 3' | -52.4 | NC_005263.2 | + | 12095 | 0.69 | 0.632347 |
Target: 5'- uCGucGCGGccUGGCaUGCGCAGCGGcgcGCg -3' miRNA: 3'- -GCuuCGCUucACCG-ACGCGUUGCU---UG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 35361 | 0.7 | 0.597037 |
Target: 5'- -cAGGUGAuccgcccugaucaGGUGGCgGCGCGGCuGAACa -3' miRNA: 3'- gcUUCGCU-------------UCACCGaCGCGUUG-CUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 39515 | 0.7 | 0.564276 |
Target: 5'- -aAGGCGAAGaUGGaagcgcgcgGCGUAACGGACg -3' miRNA: 3'- gcUUCGCUUC-ACCga-------CGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 9448 | 0.7 | 0.553083 |
Target: 5'- uGAucuuGGCGAGGuUGGCgucgaUGCGCGACGcGGCu -3' miRNA: 3'- gCU----UCGCUUC-ACCG-----ACGCGUUGC-UUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 30265 | 0.71 | 0.530907 |
Target: 5'- uCGucGGCGAAGc-GCUGCGCAAuCGGGCc -3' miRNA: 3'- -GCu-UCGCUUCacCGACGCGUU-GCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 37380 | 0.72 | 0.446039 |
Target: 5'- uCGAGucuGCGucGcccUGGCUGCGCGACGuGCa -3' miRNA: 3'- -GCUU---CGCuuC---ACCGACGCGUUGCuUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 4079 | 0.73 | 0.416199 |
Target: 5'- aGAAGuCGAacGGUGcGUugUGCGCGACGAAUg -3' miRNA: 3'- gCUUC-GCU--UCAC-CG--ACGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 21200 | 0.73 | 0.406526 |
Target: 5'- gCGgcGCGGgcgAGUGGgUGCGUuuCGAGCg -3' miRNA: 3'- -GCuuCGCU---UCACCgACGCGuuGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 32001 | 0.73 | 0.406526 |
Target: 5'- uGuGGCgGGAGUGGCacugUGgGCGGCGAGCg -3' miRNA: 3'- gCuUCG-CUUCACCG----ACgCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 19855 | 0.74 | 0.387611 |
Target: 5'- aCGAuGCGAacaaGGUcacGGCgaGCGCGGCGAGCg -3' miRNA: 3'- -GCUuCGCU----UCA---CCGa-CGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 42118 | 0.74 | 0.378374 |
Target: 5'- aCGAggauAGCGucGU-GCUGCGCGACGAGg -3' miRNA: 3'- -GCU----UCGCuuCAcCGACGCGUUGCUUg -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 24455 | 0.74 | 0.35156 |
Target: 5'- aCGGcacGGCGAAG-GGUUuccuacGCGCGACGAGCu -3' miRNA: 3'- -GCU---UCGCUUCaCCGA------CGCGUUGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 9186 | 0.76 | 0.265081 |
Target: 5'- gCGAAGCGAcGcGGgUGCGCAaACGGGCg -3' miRNA: 3'- -GCUUCGCUuCaCCgACGCGU-UGCUUG- -5' |
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24123 | 3' | -52.4 | NC_005263.2 | + | 42642 | 1.11 | 0.00109 |
Target: 5'- cCGAAGCGAAGUGGCUGCGCAACGAACa -3' miRNA: 3'- -GCUUCGCUUCACCGACGCGUUGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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