miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24124 3' -46.6 NC_005263.2 + 41139 0.66 0.989564
Target:  5'- gCGAGuauccGGAAACCGGcguucgcGCGGCGUGg -3'
miRNA:   3'- -GCUUcuu--CUUUUGGCCau-----UGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 5522 0.66 0.989564
Target:  5'- gCGAGGAuauAGGucaugccguGGCCGGcAACGGCcUGg -3'
miRNA:   3'- -GCUUCU---UCUu--------UUGGCCaUUGCCGuAC- -5'
24124 3' -46.6 NC_005263.2 + 19910 0.66 0.987949
Target:  5'- ------uGAAcGCCGGcAACGGCAUGc -3'
miRNA:   3'- gcuucuuCUUuUGGCCaUUGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 22187 0.66 0.987949
Target:  5'- ----cGGGcGAACCGGUGcUGGCGUGg -3'
miRNA:   3'- gcuucUUCuUUUGGCCAUuGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 27753 0.67 0.981934
Target:  5'- aCGAAGcuguGGAucAGGCCGGUAuCGGUg-- -3'
miRNA:   3'- -GCUUCu---UCU--UUUGGCCAUuGCCGuac -5'
24124 3' -46.6 NC_005263.2 + 42750 0.67 0.976824
Target:  5'- uCGAcccGAAGAAu-CCGGgcauccacGGCGGCGUGa -3'
miRNA:   3'- -GCUu--CUUCUUuuGGCCa-------UUGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 38119 0.67 0.976824
Target:  5'- gCGcAAGAcGGcGAACCGG--ACGGCGUGc -3'
miRNA:   3'- -GC-UUCU-UCuUUUGGCCauUGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 39533 0.69 0.944179
Target:  5'- gCGAAucGAAGAAAggcgacuggacgacGCUGGUcGCGGCAUu -3'
miRNA:   3'- -GCUU--CUUCUUU--------------UGGCCAuUGCCGUAc -5'
24124 3' -46.6 NC_005263.2 + 38195 0.7 0.90754
Target:  5'- aCGAGGAAGAAGgcccgacgccgcgcGCCGacGACGaGCAUGa -3'
miRNA:   3'- -GCUUCUUCUUU--------------UGGCcaUUGC-CGUAC- -5'
24124 3' -46.6 NC_005263.2 + 17020 0.72 0.8444
Target:  5'- cCGAcuucGAGAAcgaugucgcagcGGCUGGUGGCGGCGUGa -3'
miRNA:   3'- -GCUuc--UUCUU------------UUGGCCAUUGCCGUAC- -5'
24124 3' -46.6 NC_005263.2 + 24679 0.76 0.624794
Target:  5'- aCGAucGGggGc--GCCGGUAACGGCGg- -3'
miRNA:   3'- -GCU--UCuuCuuuUGGCCAUUGCCGUac -5'
24124 3' -46.6 NC_005263.2 + 42458 1.11 0.005624
Target:  5'- uCGAAGAAGAAAACCGGUAACGGCAUGg -3'
miRNA:   3'- -GCUUCUUCUUUUGGCCAUUGCCGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.