miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24127 5' -52.5 NC_005263.2 + 19867 0.66 0.86525
Target:  5'- aGGUCacGGcGAGcgcGGCgAGCGCGGCCg -3'
miRNA:   3'- cCUAGa-CC-CUCuu-CUGgUUGCGCUGG- -5'
24127 5' -52.5 NC_005263.2 + 11650 0.66 0.856919
Target:  5'- ---cCUGcGAGAucgagcGGAUCAGCGCGACg -3'
miRNA:   3'- ccuaGACcCUCU------UCUGGUUGCGCUGg -5'
24127 5' -52.5 NC_005263.2 + 2749 0.66 0.856919
Target:  5'- uGAUCUGcGAGcAGAagu-CGCGACCg -3'
miRNA:   3'- cCUAGACcCUCuUCUgguuGCGCUGG- -5'
24127 5' -52.5 NC_005263.2 + 19195 0.66 0.839539
Target:  5'- ----aUGGGAc-GGAUCAGCGCGGCg -3'
miRNA:   3'- ccuagACCCUcuUCUGGUUGCGCUGg -5'
24127 5' -52.5 NC_005263.2 + 32424 0.66 0.836852
Target:  5'- aGGAUgaGGGAauggucagcggaaaGAAcGuguCCGACGCGACg -3'
miRNA:   3'- -CCUAgaCCCU--------------CUU-Cu--GGUUGCGCUGg -5'
24127 5' -52.5 NC_005263.2 + 9348 0.66 0.830507
Target:  5'- cGGAUCguaucGGuGAAGGCgAGCGcCGGCg -3'
miRNA:   3'- -CCUAGac---CCuCUUCUGgUUGC-GCUGg -5'
24127 5' -52.5 NC_005263.2 + 30333 0.67 0.80216
Target:  5'- -aAUUUGcGAGAAGcgcguGCCgAGCGCGGCCg -3'
miRNA:   3'- ccUAGACcCUCUUC-----UGG-UUGCGCUGG- -5'
24127 5' -52.5 NC_005263.2 + 44332 0.67 0.801185
Target:  5'- cGGcGUgUGGGAGAAcACCGugccgcugcccgcGCGCGAgCa -3'
miRNA:   3'- -CC-UAgACCCUCUUcUGGU-------------UGCGCUgG- -5'
24127 5' -52.5 NC_005263.2 + 45894 0.68 0.772163
Target:  5'- uGAUCgcgcagGGGcGaAAGACCAGauguggGCGACCg -3'
miRNA:   3'- cCUAGa-----CCCuC-UUCUGGUUg-----CGCUGG- -5'
24127 5' -52.5 NC_005263.2 + 47316 0.68 0.761851
Target:  5'- cGGA-CUGGGu----GCCGACGuCGACCc -3'
miRNA:   3'- -CCUaGACCCucuucUGGUUGC-GCUGG- -5'
24127 5' -52.5 NC_005263.2 + 10914 0.69 0.686493
Target:  5'- cGcgCUGGGGGAu-GCCGcACGUGAUCg -3'
miRNA:   3'- cCuaGACCCUCUucUGGU-UGCGCUGG- -5'
24127 5' -52.5 NC_005263.2 + 41765 0.69 0.686493
Target:  5'- cGAUCaacGAGGAGAUCGGCGCGGgCg -3'
miRNA:   3'- cCUAGaccCUCUUCUGGUUGCGCUgG- -5'
24127 5' -52.5 NC_005263.2 + 5374 0.7 0.630808
Target:  5'- cGGGUCgaucGGGuuGAAG-CCGGCGuUGACCu -3'
miRNA:   3'- -CCUAGa---CCCu-CUUCuGGUUGC-GCUGG- -5'
24127 5' -52.5 NC_005263.2 + 22150 0.71 0.597324
Target:  5'- gGGcgCUGuGGucGAaccAGACCGACGUGACg -3'
miRNA:   3'- -CCuaGAC-CCu-CU---UCUGGUUGCGCUGg -5'
24127 5' -52.5 NC_005263.2 + 41894 1.03 0.00518
Target:  5'- uGGAUCUGGGAGAAGACCAACGC-ACCg -3'
miRNA:   3'- -CCUAGACCCUCUUCUGGUUGCGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.