Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24128 | 3' | -51 | NC_005263.2 | + | 17306 | 0.71 | 0.584784 |
Target: 5'- --cGCcGAGC-ACGUCGcCGCCGAGCa -3' miRNA: 3'- uuuCGaCUUGcUGCAGUaGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 24776 | 0.76 | 0.321796 |
Target: 5'- --cGCUcacGGGCGGCGUCGgcggcUCGCCGGGCg -3' miRNA: 3'- uuuCGA---CUUGCUGCAGU-----AGCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 45931 | 0.79 | 0.221286 |
Target: 5'- gAAGGCUGGGCG-CGUCucgCGCCGGAUc -3' miRNA: 3'- -UUUCGACUUGCuGCAGua-GCGGCUUG- -5' |
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24128 | 3' | -51 | NC_005263.2 | + | 41106 | 1.08 | 0.002624 |
Target: 5'- aAAAGCUGAACGACGUCAUCGCCGAACu -3' miRNA: 3'- -UUUCGACUUGCUGCAGUAGCGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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