miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24129 3' -56.6 NC_005263.2 + 20810 0.66 0.653494
Target:  5'- gCCGUGGUAuUUCugcaGGCGCGGCucGGCc -3'
miRNA:   3'- -GGCACCGUcAAGc---CUGUGCCGcuCUG- -5'
24129 3' -56.6 NC_005263.2 + 20886 0.66 0.653494
Target:  5'- gCCaGUGGCAGga-GGcGCACGG-GAuGACg -3'
miRNA:   3'- -GG-CACCGUCaagCC-UGUGCCgCU-CUG- -5'
24129 3' -56.6 NC_005263.2 + 9533 0.66 0.652406
Target:  5'- gCCGUGcGCGGcagCGaccGACGCGGCGcucgcggcuugccAGGCg -3'
miRNA:   3'- -GGCAC-CGUCaa-GC---CUGUGCCGC-------------UCUG- -5'
24129 3' -56.6 NC_005263.2 + 31010 0.66 0.620793
Target:  5'- aUCGUGcaGCAGUgcggCGaGGCGCGGCGuGcGCu -3'
miRNA:   3'- -GGCAC--CGUCAa---GC-CUGUGCCGCuC-UG- -5'
24129 3' -56.6 NC_005263.2 + 11406 0.66 0.620793
Target:  5'- aCGUGGU---UCGGGCGCGGCu---- -3'
miRNA:   3'- gGCACCGucaAGCCUGUGCCGcucug -5'
24129 3' -56.6 NC_005263.2 + 41735 0.66 0.609899
Target:  5'- aCGcgGGCGGcaacUUCGGgcgGCACGGCGcGAUc -3'
miRNA:   3'- gGCa-CCGUC----AAGCC---UGUGCCGCuCUG- -5'
24129 3' -56.6 NC_005263.2 + 43 0.67 0.566601
Target:  5'- gCGcGGCAGgUCGGGCGCgccuucguaccaGGUGAGGu -3'
miRNA:   3'- gGCaCCGUCaAGCCUGUG------------CCGCUCUg -5'
24129 3' -56.6 NC_005263.2 + 15717 0.67 0.545232
Target:  5'- aCG-GGCGGUUCGaccaGCGCGGCGuuaGCg -3'
miRNA:   3'- gGCaCCGUCAAGCc---UGUGCCGCuc-UG- -5'
24129 3' -56.6 NC_005263.2 + 25675 0.68 0.524129
Target:  5'- aCGUaGCAauccGUcacccCGGACACGGCGAGcACg -3'
miRNA:   3'- gGCAcCGU----CAa----GCCUGUGCCGCUC-UG- -5'
24129 3' -56.6 NC_005263.2 + 24924 0.69 0.472871
Target:  5'- ---gGGCucuaacccGUUCGGugGCGGCG-GACg -3'
miRNA:   3'- ggcaCCGu-------CAAGCCugUGCCGCuCUG- -5'
24129 3' -56.6 NC_005263.2 + 25018 0.69 0.46292
Target:  5'- gCgGUGGCGGUggcugCGGuggcguguACGCGGC-AGGCa -3'
miRNA:   3'- -GgCACCGUCAa----GCC--------UGUGCCGcUCUG- -5'
24129 3' -56.6 NC_005263.2 + 5572 0.69 0.447231
Target:  5'- aCCGUucagcucgauugugcGGCcg-UCGGgcauccGCACGGCGAGGCc -3'
miRNA:   3'- -GGCA---------------CCGucaAGCC------UGUGCCGCUCUG- -5'
24129 3' -56.6 NC_005263.2 + 35711 0.7 0.414903
Target:  5'- gCCGgccGGCAaggUCGaAgACGGCGAGACg -3'
miRNA:   3'- -GGCa--CCGUca-AGCcUgUGCCGCUCUG- -5'
24129 3' -56.6 NC_005263.2 + 27534 0.7 0.405672
Target:  5'- cCCGUcggcacggccGGCAGgcCGGGCacgagcgucGCGGCGAGGu -3'
miRNA:   3'- -GGCA----------CCGUCaaGCCUG---------UGCCGCUCUg -5'
24129 3' -56.6 NC_005263.2 + 31999 0.7 0.405672
Target:  5'- aCUGUGGCGGgagUGGcACuguggGCGGCGAGcGCa -3'
miRNA:   3'- -GGCACCGUCaa-GCC-UG-----UGCCGCUC-UG- -5'
24129 3' -56.6 NC_005263.2 + 22504 0.71 0.361508
Target:  5'- gCCGgcGGCGGUUCGGcgGCuGCGGCcugcucgaugccGAGACg -3'
miRNA:   3'- -GGCa-CCGUCAAGCC--UG-UGCCG------------CUCUG- -5'
24129 3' -56.6 NC_005263.2 + 14243 0.71 0.353086
Target:  5'- cCCGUGGCGug-CGGGCuggcuuGCGGCGGccGGCg -3'
miRNA:   3'- -GGCACCGUcaaGCCUG------UGCCGCU--CUG- -5'
24129 3' -56.6 NC_005263.2 + 40779 1.12 0.000462
Target:  5'- gCCGUGGCAGUUCGGACACGGCGAGACg -3'
miRNA:   3'- -GGCACCGUCAAGCCUGUGCCGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.