miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24129 5' -53.6 NC_005263.2 + 29872 0.66 0.763972
Target:  5'- uUGCUUGUGGCguUCGucuugaUGCCGUg -3'
miRNA:   3'- gACGGACACCG--AGUuucuugACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 37983 0.66 0.762918
Target:  5'- -cGCUgaagGUGGCggCAAcGAACUcgccacgauugguGCCGCa -3'
miRNA:   3'- gaCGGa---CACCGa-GUUuCUUGA-------------CGGCG- -5'
24129 5' -53.6 NC_005263.2 + 35891 0.66 0.753373
Target:  5'- -cGCauucgacUGGUUCGAuccggacGAGCUGCCGCa -3'
miRNA:   3'- gaCGgac----ACCGAGUUu------CUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 44153 0.66 0.720839
Target:  5'- -gGCCUGccaGGCUCGcu-GGCUGgCGCg -3'
miRNA:   3'- gaCGGACa--CCGAGUuucUUGACgGCG- -5'
24129 5' -53.6 NC_005263.2 + 38489 0.66 0.709789
Target:  5'- uUGUCgauccGUGGCgcgacgCGAuGAucgcGCUGCCGCa -3'
miRNA:   3'- gACGGa----CACCGa-----GUUuCU----UGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 3396 0.67 0.698658
Target:  5'- -cGCCgucguugcgGGCacuucggUAAAGAACUGCUGCg -3'
miRNA:   3'- gaCGGaca------CCGa------GUUUCUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 36799 0.68 0.63085
Target:  5'- uUGCCUGgcgaGGC-CAua-AAUUGCCGCu -3'
miRNA:   3'- gACGGACa---CCGaGUuucUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 34011 0.68 0.63085
Target:  5'- gCUGCgUcGcGGCgcgCGAuccAGAGCUGCUGCg -3'
miRNA:   3'- -GACGgA-CaCCGa--GUU---UCUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 46606 0.68 0.608136
Target:  5'- -cGCC-GUGcGCUCgAAAGAAaccgagUGCCGCg -3'
miRNA:   3'- gaCGGaCAC-CGAG-UUUCUUg-----ACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 3170 0.68 0.596806
Target:  5'- -gGCUUcGUGGCgcgGAAuAACUGCCGCu -3'
miRNA:   3'- gaCGGA-CACCGag-UUUcUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 17640 0.68 0.596806
Target:  5'- -cGCCggaUGUGGCgcaacgCGAAG-GCcGCCGCg -3'
miRNA:   3'- gaCGG---ACACCGa-----GUUUCuUGaCGGCG- -5'
24129 5' -53.6 NC_005263.2 + 12207 0.68 0.594544
Target:  5'- -cGCCUGUGuCUCGaccgcaccgacaucaAcgcggcgaaguauuuGGGGCUGCCGCa -3'
miRNA:   3'- gaCGGACACcGAGU---------------U---------------UCUUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 31267 0.69 0.551903
Target:  5'- -cGCCg--GGCaggUCGAAGuGCUGUCGCa -3'
miRNA:   3'- gaCGGacaCCG---AGUUUCuUGACGGCG- -5'
24129 5' -53.6 NC_005263.2 + 40814 1.11 0.000745
Target:  5'- cCUGCCUGUGGCUCAAAGAACUGCCGCc -3'
miRNA:   3'- -GACGGACACCGAGUUUCUUGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.