miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 3' -60.3 NC_005263.2 + 24855 0.66 0.381641
Target:  5'- cGGUGCGCcAGcCGGCGgcuaCGGcCAGGAu -3'
miRNA:   3'- uUCGCGCGuUC-GCCGCac--GUC-GUCCU- -5'
24130 3' -60.3 NC_005263.2 + 34649 0.66 0.381641
Target:  5'- uGGCaGCGCAGGCaGCccaaGUGCGGU-GGAa -3'
miRNA:   3'- uUCG-CGCGUUCGcCG----CACGUCGuCCU- -5'
24130 3' -60.3 NC_005263.2 + 44770 0.66 0.381641
Target:  5'- -cGCGCGCGgcgccGGCGGCGcGCAGaCGu-- -3'
miRNA:   3'- uuCGCGCGU-----UCGCCGCaCGUC-GUccu -5'
24130 3' -60.3 NC_005263.2 + 19876 0.66 0.381641
Target:  5'- cGAGCGCgGCGAGC-GCG-GCcgauGCAGGc -3'
miRNA:   3'- -UUCGCG-CGUUCGcCGCaCGu---CGUCCu -5'
24130 3' -60.3 NC_005263.2 + 37450 0.66 0.364124
Target:  5'- -cGCGCGCGGucugcGCGGCGUccauguguacuGCGGCGuGAc -3'
miRNA:   3'- uuCGCGCGUU-----CGCCGCA-----------CGUCGUcCU- -5'
24130 3' -60.3 NC_005263.2 + 17573 0.66 0.364124
Target:  5'- cGAGCaGCGCAucgAGCuGCucgcGCAGCGGGGu -3'
miRNA:   3'- -UUCG-CGCGU---UCGcCGca--CGUCGUCCU- -5'
24130 3' -60.3 NC_005263.2 + 6470 0.66 0.355576
Target:  5'- cGAGCGCGUggGCcGCaGUGCAacCAGGc -3'
miRNA:   3'- -UUCGCGCGuuCGcCG-CACGUc-GUCCu -5'
24130 3' -60.3 NC_005263.2 + 26705 0.66 0.338908
Target:  5'- -uGCGCcgaGCAGGcCGGCcUGCGGCAGc- -3'
miRNA:   3'- uuCGCG---CGUUC-GCCGcACGUCGUCcu -5'
24130 3' -60.3 NC_005263.2 + 42063 0.66 0.338908
Target:  5'- cGGCGCGCAGGCGGUGaGUucGUAcGAu -3'
miRNA:   3'- uUCGCGCGUUCGCCGCaCGu-CGUcCU- -5'
24130 3' -60.3 NC_005263.2 + 35170 0.67 0.322815
Target:  5'- -uGCGCGCGuaccAGCGcaauGCGcUGCAGCAGc- -3'
miRNA:   3'- uuCGCGCGU----UCGC----CGC-ACGUCGUCcu -5'
24130 3' -60.3 NC_005263.2 + 3307 0.67 0.322815
Target:  5'- -uGCGCGC-GGCGGCGcGCGGUu-GAa -3'
miRNA:   3'- uuCGCGCGuUCGCCGCaCGUCGucCU- -5'
24130 3' -60.3 NC_005263.2 + 43142 0.67 0.302757
Target:  5'- gGAGCGCGCcGgaacucagucgucgcGCuGGCGUGCGGCAc-- -3'
miRNA:   3'- -UUCGCGCGuU---------------CG-CCGCACGUCGUccu -5'
24130 3' -60.3 NC_005263.2 + 27744 0.67 0.302757
Target:  5'- cGGCGCGCGaucAGCcaugcgcgcccccgaGGUGcgGCGGCAGGc -3'
miRNA:   3'- uUCGCGCGU---UCG---------------CCGCa-CGUCGUCCu -5'
24130 3' -60.3 NC_005263.2 + 29235 0.67 0.299758
Target:  5'- cGGCGCGC-AGCGGCGcGCcgaGGCAc-- -3'
miRNA:   3'- uUCGCGCGuUCGCCGCaCG---UCGUccu -5'
24130 3' -60.3 NC_005263.2 + 5911 0.67 0.299758
Target:  5'- cAGCGCcCGGcGCGGCGUGC-GUAcGGAu -3'
miRNA:   3'- uUCGCGcGUU-CGCCGCACGuCGU-CCU- -5'
24130 3' -60.3 NC_005263.2 + 32667 0.67 0.29236
Target:  5'- uGGCGCGgGucGGCGGCGaUGUcgacgugcgucAGCAGGu -3'
miRNA:   3'- uUCGCGCgU--UCGCCGC-ACG-----------UCGUCCu -5'
24130 3' -60.3 NC_005263.2 + 44700 0.67 0.29236
Target:  5'- -uGCGCGCAcacgucGGCGGCcgacUGCAGCAc-- -3'
miRNA:   3'- uuCGCGCGU------UCGCCGc---ACGUCGUccu -5'
24130 3' -60.3 NC_005263.2 + 1846 0.67 0.29236
Target:  5'- aAAGUGUGCAGGcCGGCGacgUGCGGUucuGGc -3'
miRNA:   3'- -UUCGCGCGUUC-GCCGC---ACGUCGu--CCu -5'
24130 3' -60.3 NC_005263.2 + 946 0.67 0.285106
Target:  5'- uGGCaccCGCGAGCGGCGacGUAGCGGcGGu -3'
miRNA:   3'- uUCGc--GCGUUCGCCGCa-CGUCGUC-CU- -5'
24130 3' -60.3 NC_005263.2 + 17405 0.67 0.285106
Target:  5'- -cGCGCGCcuggcGGGCGGUGUcGCAGguGc- -3'
miRNA:   3'- uuCGCGCG-----UUCGCCGCA-CGUCguCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.