miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 22408 0.66 0.651615
Target:  5'- --aCGUacGCGCcGCCgUGCUCGcCGUGUc -3'
miRNA:   3'- uaaGCA--CGCGaUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 1054 0.66 0.614873
Target:  5'- uUUCGUgcgGCGCUugCgaggagGCUUGACggaagugccgaauuGCGCg -3'
miRNA:   3'- uAAGCA---CGCGAugGa-----CGAGCUG--------------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 37951 0.66 0.607089
Target:  5'- ---gGUGCGCaACCgGC-CGAUGcCGCg -3'
miRNA:   3'- uaagCACGCGaUGGaCGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 23915 0.66 0.607089
Target:  5'- -gUCGcGCGCaucGCUugguggcugaUGCUCGGCGgGCa -3'
miRNA:   3'- uaAGCaCGCGa--UGG----------ACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 17758 0.66 0.607089
Target:  5'- --gCGgcaGCGCgGCCgcGCUCGgcACGCGCu -3'
miRNA:   3'- uaaGCa--CGCGaUGGa-CGAGC--UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 4477 0.66 0.607089
Target:  5'- --cCGUGCGCgcg--GgUCGGCGUGCu -3'
miRNA:   3'- uaaGCACGCGauggaCgAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45824 0.66 0.595988
Target:  5'- --aCG-GCGCacgACCUGC-CGACG-GCg -3'
miRNA:   3'- uaaGCaCGCGa--UGGACGaGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 21581 0.66 0.595988
Target:  5'- --gCGUGCucGCcGCCgGCgUCGACGcCGCg -3'
miRNA:   3'- uaaGCACG--CGaUGGaCG-AGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 18907 0.66 0.59488
Target:  5'- -----cGCGCcgGCCUGCgUCGAgcgugacCGCGCg -3'
miRNA:   3'- uaagcaCGCGa-UGGACG-AGCU-------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18779 0.66 0.618212
Target:  5'- -cUCGcGCugGUUAUCgUGCUCGcCGCGCg -3'
miRNA:   3'- uaAGCaCG--CGAUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33649 0.66 0.618212
Target:  5'- --gCGUGcCGCcGCUcgGCUCGaaagagGCGCGCg -3'
miRNA:   3'- uaaGCAC-GCGaUGGa-CGAGC------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 32521 0.66 0.618212
Target:  5'- -cUCGUgcaccggccGCGCUACCgucauucggcGUUCaGCGCGCg -3'
miRNA:   3'- uaAGCA---------CGCGAUGGa---------CGAGcUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 28208 0.66 0.650503
Target:  5'- --cCGUGgcgaGCUguuggugGCCUGCaUCGGcCGCGCu -3'
miRNA:   3'- uaaGCACg---CGA-------UGGACG-AGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 7297 0.66 0.640485
Target:  5'- --gCGUGC-CUGCggccagguCUGCgCGAUGCGCu -3'
miRNA:   3'- uaaGCACGcGAUG--------GACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19430 0.66 0.633802
Target:  5'- uGUUCG-GCG-UGCC-GCUCGAuacgaugaaccagauCGCGCg -3'
miRNA:   3'- -UAAGCaCGCgAUGGaCGAGCU---------------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 46169 0.66 0.629347
Target:  5'- --cCG-GCGUcGCCggUGC-CGGCGCGCu -3'
miRNA:   3'- uaaGCaCGCGaUGG--ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41717 0.66 0.629347
Target:  5'- --cUGUGUGacCUACCcuacgGCaCGACGCGCa -3'
miRNA:   3'- uaaGCACGC--GAUGGa----CGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19772 0.66 0.629347
Target:  5'- --aCGUGCGCcucACggGCUCGGCG-GCc -3'
miRNA:   3'- uaaGCACGCGa--UGgaCGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 18947 0.66 0.629347
Target:  5'- -cUCGaGCGC-GCCgGUUCGA-GCGCa -3'
miRNA:   3'- uaAGCaCGCGaUGGaCGAGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 44370 0.66 0.629347
Target:  5'- --aCGUacGCGCUGauCCgGCcCGGCGUGCg -3'
miRNA:   3'- uaaGCA--CGCGAU--GGaCGaGCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.