Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24130 | 5' | -55.9 | NC_005263.2 | + | 19772 | 0.66 | 0.629347 |
Target: 5'- --aCGUGCGCcucACggGCUCGGCG-GCc -3' miRNA: 3'- uaaGCACGCGa--UGgaCGAGCUGCgCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 41717 | 0.66 | 0.629347 |
Target: 5'- --cUGUGUGacCUACCcuacgGCaCGACGCGCa -3' miRNA: 3'- uaaGCACGC--GAUGGa----CGaGCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 46169 | 0.66 | 0.629347 |
Target: 5'- --cCG-GCGUcGCCggUGC-CGGCGCGCu -3' miRNA: 3'- uaaGCaCGCGaUGG--ACGaGCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 19430 | 0.66 | 0.633802 |
Target: 5'- uGUUCG-GCG-UGCC-GCUCGAuacgaugaaccagauCGCGCg -3' miRNA: 3'- -UAAGCaCGCgAUGGaCGAGCU---------------GCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 7297 | 0.66 | 0.640485 |
Target: 5'- --gCGUGC-CUGCggccagguCUGCgCGAUGCGCu -3' miRNA: 3'- uaaGCACGcGAUG--------GACGaGCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 28208 | 0.66 | 0.650503 |
Target: 5'- --cCGUGgcgaGCUguuggugGCCUGCaUCGGcCGCGCu -3' miRNA: 3'- uaaGCACg---CGA-------UGGACG-AGCU-GCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 22408 | 0.66 | 0.651615 |
Target: 5'- --aCGUacGCGCcGCCgUGCUCGcCGUGUc -3' miRNA: 3'- uaaGCA--CGCGaUGG-ACGAGCuGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 32521 | 0.66 | 0.618212 |
Target: 5'- -cUCGUgcaccggccGCGCUACCgucauucggcGUUCaGCGCGCg -3' miRNA: 3'- uaAGCA---------CGCGAUGGa---------CGAGcUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 1054 | 0.66 | 0.614873 |
Target: 5'- uUUCGUgcgGCGCUugCgaggagGCUUGACggaagugccgaauuGCGCg -3' miRNA: 3'- uAAGCA---CGCGAugGa-----CGAGCUG--------------CGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 17758 | 0.66 | 0.607089 |
Target: 5'- --gCGgcaGCGCgGCCgcGCUCGgcACGCGCu -3' miRNA: 3'- uaaGCa--CGCGaUGGa-CGAGC--UGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 33649 | 0.66 | 0.618212 |
Target: 5'- --gCGUGcCGCcGCUcgGCUCGaaagagGCGCGCg -3' miRNA: 3'- uaaGCAC-GCGaUGGa-CGAGC------UGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 23915 | 0.66 | 0.607089 |
Target: 5'- -gUCGcGCGCaucGCUugguggcugaUGCUCGGCGgGCa -3' miRNA: 3'- uaAGCaCGCGa--UGG----------ACGAGCUGCgCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 18779 | 0.66 | 0.618212 |
Target: 5'- -cUCGcGCugGUUAUCgUGCUCGcCGCGCg -3' miRNA: 3'- uaAGCaCG--CGAUGG-ACGAGCuGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 37951 | 0.66 | 0.607089 |
Target: 5'- ---gGUGCGCaACCgGC-CGAUGcCGCg -3' miRNA: 3'- uaagCACGCGaUGGaCGaGCUGC-GCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 41467 | 0.67 | 0.57389 |
Target: 5'- -aUCGaGCag-GCgCUGCUCGACGCGg -3' miRNA: 3'- uaAGCaCGcgaUG-GACGAGCUGCGCg -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 18849 | 0.67 | 0.584919 |
Target: 5'- cGUUCGaccGCGUgaacaacGCgUGcCUCGGCGCGCc -3' miRNA: 3'- -UAAGCa--CGCGa------UGgAC-GAGCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 45919 | 0.67 | 0.584919 |
Target: 5'- --aUGUGgGCgACCgaagGCUgGGCGCGUc -3' miRNA: 3'- uaaGCACgCGaUGGa---CGAgCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 3744 | 0.67 | 0.57389 |
Target: 5'- uUUCGaa-GUacGCCUGCUCG-CGCGCg -3' miRNA: 3'- uAAGCacgCGa-UGGACGAGCuGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 15567 | 0.67 | 0.545465 |
Target: 5'- --gCGUG-GCcgGCCUGCcgacagucgccgcguUCGACGUGCu -3' miRNA: 3'- uaaGCACgCGa-UGGACG---------------AGCUGCGCG- -5' |
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24130 | 5' | -55.9 | NC_005263.2 | + | 32740 | 0.67 | 0.530344 |
Target: 5'- --aCGUacGCGCUGCC-GCUUGcGCgGCGCa -3' miRNA: 3'- uaaGCA--CGCGAUGGaCGAGC-UG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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