miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 40676 1.09 0.000714
Target:  5'- cAUUCGUGCGCUACCUGCUCGACGCGCc -3'
miRNA:   3'- -UAAGCACGCGAUGGACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 38435 0.8 0.084293
Target:  5'- --aCGUGCGUUACgUGCUCGGCG-GCg -3'
miRNA:   3'- uaaGCACGCGAUGgACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 9693 0.79 0.103133
Target:  5'- --aCGUcGCGCUuuGCCUGCUCGAC-CGCu -3'
miRNA:   3'- uaaGCA-CGCGA--UGGACGAGCUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 41658 0.76 0.16196
Target:  5'- uGUUCG-GCGaCUGCCUGCUCG-CGaUGCa -3'
miRNA:   3'- -UAAGCaCGC-GAUGGACGAGCuGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 21118 0.74 0.218485
Target:  5'- --cCG-GCGCaGCgggugCUGCUCGGCGCGCa -3'
miRNA:   3'- uaaGCaCGCGaUG-----GACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 8806 0.74 0.218485
Target:  5'- -aUCGcgcgcgcaUGCGcCUGCCggccGCUCGGCGUGCg -3'
miRNA:   3'- uaAGC--------ACGC-GAUGGa---CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 5475 0.74 0.218485
Target:  5'- -gUCG-GCGCUGCuucgugCUGCUCGACaggggGCGCg -3'
miRNA:   3'- uaAGCaCGCGAUG------GACGAGCUG-----CGCG- -5'
24130 5' -55.9 NC_005263.2 + 22043 0.74 0.236591
Target:  5'- --aCGUGCGCcAgCaGCUCGACGCaGCg -3'
miRNA:   3'- uaaGCACGCGaUgGaCGAGCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 37574 0.74 0.218485
Target:  5'- cGUUCcgGUGCGCUGCUcgUGCgucagcucgcCGACGCGCu -3'
miRNA:   3'- -UAAG--CACGCGAUGG--ACGa---------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 22513 0.74 0.212718
Target:  5'- gGUUCGgcgGCuGCgGCCUGCUCGAUGC-Cg -3'
miRNA:   3'- -UAAGCa--CG-CGaUGGACGAGCUGCGcG- -5'
24130 5' -55.9 NC_005263.2 + 37354 0.74 0.218485
Target:  5'- -gUCG-GuCGCgGCCgUGCUCGAUGCGCu -3'
miRNA:   3'- uaAGCaC-GCGaUGG-ACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30519 0.73 0.249349
Target:  5'- -gUCGUGacccCGCUGCgCgagcaGCUCGAUGCGCu -3'
miRNA:   3'- uaAGCAC----GCGAUG-Ga----CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30786 0.72 0.283726
Target:  5'- -cUCGcgcaUGCGCUG-CUGCUCGGCG-GCg -3'
miRNA:   3'- uaAGC----ACGCGAUgGACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 44119 0.72 0.283726
Target:  5'- ---gGUGCGCUGCUcGg-CGGCGCGCg -3'
miRNA:   3'- uaagCACGCGAUGGaCgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 21396 0.72 0.306097
Target:  5'- -----cGCGCUgccgcaggccgGCCUGCUCGGCGCa- -3'
miRNA:   3'- uaagcaCGCGA-----------UGGACGAGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 18294 0.71 0.354816
Target:  5'- -gUCGUGCGCg--CUGCaUCGcaauACGCGCc -3'
miRNA:   3'- uaAGCACGCGaugGACG-AGC----UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 20974 0.71 0.337987
Target:  5'- -aUCGccgacgcggcUGCGC-GCCUGCgcgUCGACGUGCc -3'
miRNA:   3'- uaAGC----------ACGCGaUGGACG---AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 6169 0.71 0.354816
Target:  5'- -cUCGUGCGC--CUUGagCGGCGCGCg -3'
miRNA:   3'- uaAGCACGCGauGGACgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 24008 0.7 0.399412
Target:  5'- --gCGccGCGCUGCaaagUGC-CGACGCGCu -3'
miRNA:   3'- uaaGCa-CGCGAUGg---ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 43863 0.7 0.412525
Target:  5'- --aCGUGCGCggcauCCUgacGCcgacguuuucgagcgUCGACGCGCa -3'
miRNA:   3'- uaaGCACGCGau---GGA---CG---------------AGCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.