miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 33232 0.68 0.509018
Target:  5'- ---aGUGCG--GCCUGCUCGAgucgaucgauguUGCGCc -3'
miRNA:   3'- uaagCACGCgaUGGACGAGCU------------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 29149 0.68 0.498491
Target:  5'- -gUCGUGCcgGCUGCgCUcGUaacCGGCGCGCu -3'
miRNA:   3'- uaAGCACG--CGAUG-GA-CGa--GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33999 0.68 0.488061
Target:  5'- --cCGgccGUGUUGgCUGCgucgCGGCGCGCg -3'
miRNA:   3'- uaaGCa--CGCGAUgGACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45093 0.68 0.509018
Target:  5'- aGUUCGcGCGCUACgUcGCggcgGAUGCGCc -3'
miRNA:   3'- -UAAGCaCGCGAUGgA-CGag--CUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33379 0.68 0.498491
Target:  5'- aGUUCGUGCGCgugAUCaUGUcgugCGAUGCGa -3'
miRNA:   3'- -UAAGCACGCGa--UGG-ACGa---GCUGCGCg -5'
24130 5' -55.9 NC_005263.2 + 3421 0.68 0.519638
Target:  5'- --gUGUGCGCgcaggaugGCC-GCcgacuucuUCGGCGCGCg -3'
miRNA:   3'- uaaGCACGCGa-------UGGaCG--------AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 27224 0.68 0.519638
Target:  5'- --cCGUGCGCcuCCUGCcacUGGCGCaGCg -3'
miRNA:   3'- uaaGCACGCGauGGACGa--GCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 680 0.68 0.477736
Target:  5'- -aUCGUaGCGCgcCUUGC-CGAgCGCGCc -3'
miRNA:   3'- uaAGCA-CGCGauGGACGaGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 12314 0.68 0.477736
Target:  5'- uUUCGgcacGCGUUACCUGCUCugcuauGGCaCGCc -3'
miRNA:   3'- uAAGCa---CGCGAUGGACGAG------CUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 15567 0.67 0.545465
Target:  5'- --gCGUG-GCcgGCCUGCcgacagucgccgcguUCGACGUGCu -3'
miRNA:   3'- uaaGCACgCGa-UGGACG---------------AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 23776 0.67 0.550899
Target:  5'- --aCGUGUcgaGCUGCCcGUUacgaccgccgaugCGACGCGCg -3'
miRNA:   3'- uaaGCACG---CGAUGGaCGA-------------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 12579 0.67 0.54113
Target:  5'- --cCGcGCGCcGCCggGCgcagUCGGCGCGCc -3'
miRNA:   3'- uaaGCaCGCGaUGGa-CG----AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16804 0.67 0.57389
Target:  5'- -aUCGuUGCGaugaagGCUaGCgUCGACGCGCu -3'
miRNA:   3'- uaAGC-ACGCga----UGGaCG-AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 32740 0.67 0.530344
Target:  5'- --aCGUacGCGCUGCC-GCUUGcGCgGCGCa -3'
miRNA:   3'- uaaGCA--CGCGAUGGaCGAGC-UG-CGCG- -5'
24130 5' -55.9 NC_005263.2 + 18849 0.67 0.584919
Target:  5'- cGUUCGaccGCGUgaacaacGCgUGcCUCGGCGCGCc -3'
miRNA:   3'- -UAAGCa--CGCGa------UGgAC-GAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 9177 0.67 0.54113
Target:  5'- --cCGaUGCGCgacguCgaGCUCGGCGCGg -3'
miRNA:   3'- uaaGC-ACGCGau---GgaCGAGCUGCGCg -5'
24130 5' -55.9 NC_005263.2 + 20566 0.67 0.54113
Target:  5'- -cUCGUGCcCgGCCUGC-CGGcCGUGCc -3'
miRNA:   3'- uaAGCACGcGaUGGACGaGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 5974 0.67 0.551987
Target:  5'- ---gGUGCaguuuGCUGCCUGCUUGucacuCGCGa -3'
miRNA:   3'- uaagCACG-----CGAUGGACGAGCu----GCGCg -5'
24130 5' -55.9 NC_005263.2 + 3744 0.67 0.57389
Target:  5'- uUUCGaa-GUacGCCUGCUCG-CGCGCg -3'
miRNA:   3'- uAAGCacgCGa-UGGACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 17650 0.67 0.584919
Target:  5'- -gUCG-GCGCUACg-GCaUCGACcCGCg -3'
miRNA:   3'- uaAGCaCGCGAUGgaCG-AGCUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.