miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 13659 0.7 0.399412
Target:  5'- -gUCGUGCGC-ACC-GCgucgCGAaUGCGCa -3'
miRNA:   3'- uaAGCACGCGaUGGaCGa---GCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 15567 0.67 0.545465
Target:  5'- --gCGUG-GCcgGCCUGCcgacagucgccgcguUCGACGUGCu -3'
miRNA:   3'- uaaGCACgCGa-UGGACG---------------AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16804 0.67 0.57389
Target:  5'- -aUCGuUGCGaugaagGCUaGCgUCGACGCGCu -3'
miRNA:   3'- uaAGC-ACGCga----UGGaCG-AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16835 0.69 0.45541
Target:  5'- --aCGUGCGacagcacuucgACCUGCcCGGCGcCGCg -3'
miRNA:   3'- uaaGCACGCga---------UGGACGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 17650 0.67 0.584919
Target:  5'- -gUCG-GCGCUACg-GCaUCGACcCGCg -3'
miRNA:   3'- uaAGCaCGCGAUGgaCG-AGCUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 17758 0.66 0.607089
Target:  5'- --gCGgcaGCGCgGCCgcGCUCGgcACGCGCu -3'
miRNA:   3'- uaaGCa--CGCGaUGGa-CGAGC--UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 17890 0.66 0.595988
Target:  5'- -gUUGUGC-UUACCgUGaaCGGCGCGCa -3'
miRNA:   3'- uaAGCACGcGAUGG-ACgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18294 0.71 0.354816
Target:  5'- -gUCGUGCGCg--CUGCaUCGcaauACGCGCc -3'
miRNA:   3'- uaAGCACGCGaugGACG-AGC----UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18779 0.66 0.618212
Target:  5'- -cUCGcGCugGUUAUCgUGCUCGcCGCGCg -3'
miRNA:   3'- uaAGCaCG--CGAUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18849 0.67 0.584919
Target:  5'- cGUUCGaccGCGUgaacaacGCgUGcCUCGGCGCGCc -3'
miRNA:   3'- -UAAGCa--CGCGa------UGgAC-GAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18907 0.66 0.59488
Target:  5'- -----cGCGCcgGCCUGCgUCGAgcgugacCGCGCg -3'
miRNA:   3'- uaagcaCGCGa-UGGACG-AGCU-------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 18947 0.66 0.629347
Target:  5'- -cUCGaGCGC-GCCgGUUCGA-GCGCa -3'
miRNA:   3'- uaAGCaCGCGaUGGaCGAGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19430 0.66 0.633802
Target:  5'- uGUUCG-GCG-UGCC-GCUCGAuacgaugaaccagauCGCGCg -3'
miRNA:   3'- -UAAGCaCGCgAUGGaCGAGCU---------------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 19772 0.66 0.629347
Target:  5'- --aCGUGCGCcucACggGCUCGGCG-GCc -3'
miRNA:   3'- uaaGCACGCGa--UGgaCGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 19957 0.7 0.39021
Target:  5'- ----aUGCGCUcGCgUGCUCGGCGCugGCa -3'
miRNA:   3'- uaagcACGCGA-UGgACGAGCUGCG--CG- -5'
24130 5' -55.9 NC_005263.2 + 20566 0.67 0.54113
Target:  5'- -cUCGUGCcCgGCCUGC-CGGcCGUGCc -3'
miRNA:   3'- uaAGCACGcGaUGGACGaGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 20687 0.7 0.408751
Target:  5'- uGUUCGgcgGCGCgaaACCUGCgccggucgUGACGCaGCc -3'
miRNA:   3'- -UAAGCa--CGCGa--UGGACGa-------GCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 20974 0.71 0.337987
Target:  5'- -aUCGccgacgcggcUGCGC-GCCUGCgcgUCGACGUGCc -3'
miRNA:   3'- uaAGC----------ACGCGaUGGACG---AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 21118 0.74 0.218485
Target:  5'- --cCG-GCGCaGCgggugCUGCUCGGCGCGCa -3'
miRNA:   3'- uaaGCaCGCGaUG-----GACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 21396 0.72 0.306097
Target:  5'- -----cGCGCUgccgcaggccgGCCUGCUCGGCGCa- -3'
miRNA:   3'- uaagcaCGCGA-----------UGGACGAGCUGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.