miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 21581 0.66 0.595988
Target:  5'- --gCGUGCucGCcGCCgGCgUCGACGcCGCg -3'
miRNA:   3'- uaaGCACG--CGaUGGaCG-AGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 22043 0.74 0.236591
Target:  5'- --aCGUGCGCcAgCaGCUCGACGCaGCg -3'
miRNA:   3'- uaaGCACGCGaUgGaCGAGCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 22408 0.66 0.651615
Target:  5'- --aCGUacGCGCcGCCgUGCUCGcCGUGUc -3'
miRNA:   3'- uaaGCA--CGCGaUGG-ACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 22513 0.74 0.212718
Target:  5'- gGUUCGgcgGCuGCgGCCUGCUCGAUGC-Cg -3'
miRNA:   3'- -UAAGCa--CG-CGaUGGACGAGCUGCGcG- -5'
24130 5' -55.9 NC_005263.2 + 23388 0.67 0.57389
Target:  5'- -gUCGUauugccgccuGCGCcGCCcggcacGUUCGGCGCGCc -3'
miRNA:   3'- uaAGCA----------CGCGaUGGa-----CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 23776 0.67 0.550899
Target:  5'- --aCGUGUcgaGCUGCCcGUUacgaccgccgaugCGACGCGCg -3'
miRNA:   3'- uaaGCACG---CGAUGGaCGA-------------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 23915 0.66 0.607089
Target:  5'- -gUCGcGCGCaucGCUugguggcugaUGCUCGGCGgGCa -3'
miRNA:   3'- uaAGCaCGCGa--UGG----------ACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 24008 0.7 0.399412
Target:  5'- --gCGccGCGCUGCaaagUGC-CGACGCGCu -3'
miRNA:   3'- uaaGCa-CGCGAUGg---ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 24203 0.67 0.551987
Target:  5'- --gCGaUGCGCgcgACCUgGUUCaGCGCGCc -3'
miRNA:   3'- uaaGC-ACGCGa--UGGA-CGAGcUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 27224 0.68 0.519638
Target:  5'- --cCGUGCGCcuCCUGCcacUGGCGCaGCg -3'
miRNA:   3'- uaaGCACGCGauGGACGa--GCUGCG-CG- -5'
24130 5' -55.9 NC_005263.2 + 27615 0.66 0.618212
Target:  5'- -gUCGaugaUGCGCacgGCCUuuacCUCGACGgGCg -3'
miRNA:   3'- uaAGC----ACGCGa--UGGAc---GAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 28208 0.66 0.650503
Target:  5'- --cCGUGgcgaGCUguuggugGCCUGCaUCGGcCGCGCu -3'
miRNA:   3'- uaaGCACg---CGA-------UGGACG-AGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 29149 0.68 0.498491
Target:  5'- -gUCGUGCcgGCUGCgCUcGUaacCGGCGCGCu -3'
miRNA:   3'- uaAGCACG--CGAUG-GA-CGa--GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 29179 0.66 0.607089
Target:  5'- -cUCGaGCGCUcguGCCgcgcggucacGCUCGACGCa- -3'
miRNA:   3'- uaAGCaCGCGA---UGGa---------CGAGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 29217 0.7 0.39021
Target:  5'- --cCG-GCGCgUAUUUGCcgUCGGCGCGCa -3'
miRNA:   3'- uaaGCaCGCG-AUGGACG--AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30519 0.73 0.249349
Target:  5'- -gUCGUGacccCGCUGCgCgagcaGCUCGAUGCGCu -3'
miRNA:   3'- uaAGCAC----GCGAUG-Ga----CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30593 0.69 0.43757
Target:  5'- --cCGUGauagcCGCcGCCUGaucgaUCGACGCGCc -3'
miRNA:   3'- uaaGCAC-----GCGaUGGACg----AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 30786 0.72 0.283726
Target:  5'- -cUCGcgcaUGCGCUG-CUGCUCGGCG-GCg -3'
miRNA:   3'- uaAGC----ACGCGAUgGACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 31498 0.67 0.57389
Target:  5'- --gCG-GCGCgagcugCUGCUCG-CGCGCg -3'
miRNA:   3'- uaaGCaCGCGaug---GACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 32521 0.66 0.618212
Target:  5'- -cUCGUgcaccggccGCGCUACCgucauucggcGUUCaGCGCGCg -3'
miRNA:   3'- uaAGCA---------CGCGAUGGa---------CGAGcUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.