miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 47690 0.66 0.595988
Target:  5'- -cUCGUGCuguGCggcaAgCUGCUCGGCaCGCu -3'
miRNA:   3'- uaAGCACG---CGa---UgGACGAGCUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 47572 0.68 0.519638
Target:  5'- ----aUGCGCcACCUGCgggCGGCGCuuuGCa -3'
miRNA:   3'- uaagcACGCGaUGGACGa--GCUGCG---CG- -5'
24130 5' -55.9 NC_005263.2 + 47350 0.66 0.633802
Target:  5'- -aUCGcgcUGCGCgucGCCgaaaugggcggcgcGUUCGAUGCGCg -3'
miRNA:   3'- uaAGC---ACGCGa--UGGa-------------CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 46681 0.67 0.56291
Target:  5'- -cUCGcGCGCaGCCaaggCGGCGCGCg -3'
miRNA:   3'- uaAGCaCGCGaUGGacgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 46169 0.66 0.629347
Target:  5'- --cCG-GCGUcGCCggUGC-CGGCGCGCu -3'
miRNA:   3'- uaaGCaCGCGaUGG--ACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45919 0.67 0.584919
Target:  5'- --aUGUGgGCgACCgaagGCUgGGCGCGUc -3'
miRNA:   3'- uaaGCACgCGaUGGa---CGAgCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45824 0.66 0.595988
Target:  5'- --aCG-GCGCacgACCUGC-CGACG-GCg -3'
miRNA:   3'- uaaGCaCGCGa--UGGACGaGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 45383 0.68 0.487024
Target:  5'- cGUUCGUacgugaugcacgcGCGCUgcgcaugcACCUGCcgagCGGcCGCGCg -3'
miRNA:   3'- -UAAGCA-------------CGCGA--------UGGACGa---GCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45093 0.68 0.509018
Target:  5'- aGUUCGcGCGCUACgUcGCggcgGAUGCGCc -3'
miRNA:   3'- -UAAGCaCGCGAUGgA-CGag--CUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 44974 0.69 0.418226
Target:  5'- -gUCG-GUGCUgACCUGUccgggaUCGAgGCGCg -3'
miRNA:   3'- uaAGCaCGCGA-UGGACG------AGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 44370 0.66 0.629347
Target:  5'- --aCGUacGCGCUGauCCgGCcCGGCGUGCg -3'
miRNA:   3'- uaaGCA--CGCGAU--GGaCGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 44119 0.72 0.283726
Target:  5'- ---gGUGCGCUGCUcGg-CGGCGCGCg -3'
miRNA:   3'- uaagCACGCGAUGGaCgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 43863 0.7 0.412525
Target:  5'- --aCGUGCGCggcauCCUgacGCcgacguuuucgagcgUCGACGCGCa -3'
miRNA:   3'- uaaGCACGCGau---GGA---CG---------------AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41717 0.66 0.629347
Target:  5'- --cUGUGUGacCUACCcuacgGCaCGACGCGCa -3'
miRNA:   3'- uaaGCACGC--GAUGGa----CGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41658 0.76 0.16196
Target:  5'- uGUUCG-GCGaCUGCCUGCUCG-CGaUGCa -3'
miRNA:   3'- -UAAGCaCGC-GAUGGACGAGCuGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 41621 0.66 0.640485
Target:  5'- cGUUCGU-CGaCUGCCUGgUUGcacugcggcccACGCGCu -3'
miRNA:   3'- -UAAGCAcGC-GAUGGACgAGC-----------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41480 0.69 0.427833
Target:  5'- -----cGCGCga-CUGCUCGAcCGCGCc -3'
miRNA:   3'- uaagcaCGCGaugGACGAGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 41467 0.67 0.57389
Target:  5'- -aUCGaGCag-GCgCUGCUCGACGCGg -3'
miRNA:   3'- uaAGCaCGcgaUG-GACGAGCUGCGCg -5'
24130 5' -55.9 NC_005263.2 + 41245 0.66 0.629347
Target:  5'- -cUCGUGCGCgagggcUACCUGUcgccggucgugUCGcCGuCGCu -3'
miRNA:   3'- uaAGCACGCG------AUGGACG-----------AGCuGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 41045 0.69 0.43757
Target:  5'- -cUCGcaGCGCUcgcACCUGCcauuggcgCGAUGCGCc -3'
miRNA:   3'- uaAGCa-CGCGA---UGGACGa-------GCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.