miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 40676 1.09 0.000714
Target:  5'- cAUUCGUGCGCUACCUGCUCGACGCGCc -3'
miRNA:   3'- -UAAGCACGCGAUGGACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 40497 0.69 0.418226
Target:  5'- -gUCGUGCG--AUUUGCUCGACacggaaGCGCg -3'
miRNA:   3'- uaAGCACGCgaUGGACGAGCUG------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 39117 0.66 0.607089
Target:  5'- -cUCGUGCGC--CgUGCgUCGGCGCu- -3'
miRNA:   3'- uaAGCACGCGauGgACG-AGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 39048 0.7 0.408751
Target:  5'- -gUCGagGCGCUACagCUGUUCGccgaggcgaaaGCGCGCu -3'
miRNA:   3'- uaAGCa-CGCGAUG--GACGAGC-----------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 38920 0.69 0.467519
Target:  5'- --cCG-GCGCcgcGCCgaGCUCGACGuCGCg -3'
miRNA:   3'- uaaGCaCGCGa--UGGa-CGAGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 38577 0.67 0.584919
Target:  5'- -----cGCGUUGCC-GUcCGACGCGCu -3'
miRNA:   3'- uaagcaCGCGAUGGaCGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 38435 0.8 0.084293
Target:  5'- --aCGUGCGUUACgUGCUCGGCG-GCg -3'
miRNA:   3'- uaaGCACGCGAUGgACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 38026 0.67 0.561815
Target:  5'- -cUCGacGCGCUGCCcgcgucGCUCGGCuuccaguGCGCc -3'
miRNA:   3'- uaAGCa-CGCGAUGGa-----CGAGCUG-------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 37951 0.66 0.607089
Target:  5'- ---gGUGCGCaACCgGC-CGAUGcCGCg -3'
miRNA:   3'- uaagCACGCGaUGGaCGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 37917 0.66 0.651615
Target:  5'- --cCG-GCGaggcuucgGCCUGCUCGcgauuCGCGCu -3'
miRNA:   3'- uaaGCaCGCga------UGGACGAGCu----GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37695 0.66 0.595988
Target:  5'- cGUUCGUugaacGCGCgccggACCcGCUCGccggccggcccgGCGCGUg -3'
miRNA:   3'- -UAAGCA-----CGCGa----UGGaCGAGC------------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37611 0.69 0.427833
Target:  5'- --aCGUGCGCUucgacggcaagcACCUGCgCGGCGaccuGCu -3'
miRNA:   3'- uaaGCACGCGA------------UGGACGaGCUGCg---CG- -5'
24130 5' -55.9 NC_005263.2 + 37574 0.74 0.218485
Target:  5'- cGUUCcgGUGCGCUGCUcgUGCgucagcucgcCGACGCGCu -3'
miRNA:   3'- -UAAG--CACGCGAUGG--ACGa---------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37388 0.66 0.651615
Target:  5'- --gCGUcGCcCUGgCUGCgCGACGUGCa -3'
miRNA:   3'- uaaGCA-CGcGAUgGACGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37354 0.74 0.218485
Target:  5'- -gUCG-GuCGCgGCCgUGCUCGAUGCGCu -3'
miRNA:   3'- uaAGCaC-GCGaUGG-ACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33999 0.68 0.488061
Target:  5'- --cCGgccGUGUUGgCUGCgucgCGGCGCGCg -3'
miRNA:   3'- uaaGCa--CGCGAUgGACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33649 0.66 0.618212
Target:  5'- --gCGUGcCGCcGCUcgGCUCGaaagagGCGCGCg -3'
miRNA:   3'- uaaGCAC-GCGaUGGa-CGAGC------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33379 0.68 0.498491
Target:  5'- aGUUCGUGCGCgugAUCaUGUcgugCGAUGCGa -3'
miRNA:   3'- -UAAGCACGCGa--UGG-ACGa---GCUGCGCg -5'
24130 5' -55.9 NC_005263.2 + 33232 0.68 0.509018
Target:  5'- ---aGUGCG--GCCUGCUCGAgucgaucgauguUGCGCc -3'
miRNA:   3'- uaagCACGCgaUGGACGAGCU------------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 33216 0.69 0.43757
Target:  5'- -cUCGUGcCGC-ACCUGCacUCGGCcgacaagcuGCGCg -3'
miRNA:   3'- uaAGCAC-GCGaUGGACG--AGCUG---------CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.