miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 33999 0.68 0.488061
Target:  5'- --cCGgccGUGUUGgCUGCgucgCGGCGCGCg -3'
miRNA:   3'- uaaGCa--CGCGAUgGACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16835 0.69 0.45541
Target:  5'- --aCGUGCGacagcacuucgACCUGCcCGGCGcCGCg -3'
miRNA:   3'- uaaGCACGCga---------UGGACGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 18294 0.71 0.354816
Target:  5'- -gUCGUGCGCg--CUGCaUCGcaauACGCGCc -3'
miRNA:   3'- uaAGCACGCGaugGACG-AGC----UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 37354 0.74 0.218485
Target:  5'- -gUCG-GuCGCgGCCgUGCUCGAUGCGCu -3'
miRNA:   3'- uaAGCaC-GCGaUGG-ACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 31498 0.67 0.57389
Target:  5'- --gCG-GCGCgagcugCUGCUCG-CGCGCg -3'
miRNA:   3'- uaaGCaCGCGaug---GACGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 20566 0.67 0.54113
Target:  5'- -cUCGUGCcCgGCCUGC-CGGcCGUGCc -3'
miRNA:   3'- uaAGCACGcGaUGGACGaGCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 44974 0.69 0.418226
Target:  5'- -gUCG-GUGCUgACCUGUccgggaUCGAgGCGCg -3'
miRNA:   3'- uaAGCaCGCGA-UGGACG------AGCUgCGCG- -5'
24130 5' -55.9 NC_005263.2 + 21118 0.74 0.218485
Target:  5'- --cCG-GCGCaGCgggugCUGCUCGGCGCGCa -3'
miRNA:   3'- uaaGCaCGCGaUG-----GACGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 9177 0.67 0.54113
Target:  5'- --cCGaUGCGCgacguCgaGCUCGGCGCGg -3'
miRNA:   3'- uaaGC-ACGCGau---GgaCGAGCUGCGCg -5'
24130 5' -55.9 NC_005263.2 + 22513 0.74 0.212718
Target:  5'- gGUUCGgcgGCuGCgGCCUGCUCGAUGC-Cg -3'
miRNA:   3'- -UAAGCa--CG-CGaUGGACGAGCUGCGcG- -5'
24130 5' -55.9 NC_005263.2 + 30593 0.69 0.43757
Target:  5'- --cCGUGauagcCGCcGCCUGaucgaUCGACGCGCc -3'
miRNA:   3'- uaaGCAC-----GCGaUGGACg----AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 29149 0.68 0.498491
Target:  5'- -gUCGUGCcgGCUGCgCUcGUaacCGGCGCGCu -3'
miRNA:   3'- uaAGCACG--CGAUG-GA-CGa--GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 13659 0.7 0.399412
Target:  5'- -gUCGUGCGC-ACC-GCgucgCGAaUGCGCa -3'
miRNA:   3'- uaAGCACGCGaUGGaCGa---GCU-GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 9553 0.7 0.39021
Target:  5'- --aCGcgGCGCUcgcgGCUUGCcaggCGGCGCGCu -3'
miRNA:   3'- uaaGCa-CGCGA----UGGACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 21396 0.72 0.306097
Target:  5'- -----cGCGCUgccgcaggccgGCCUGCUCGGCGCa- -3'
miRNA:   3'- uaagcaCGCGA-----------UGGACGAGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 37574 0.74 0.218485
Target:  5'- cGUUCcgGUGCGCUGCUcgUGCgucagcucgcCGACGCGCu -3'
miRNA:   3'- -UAAG--CACGCGAUGG--ACGa---------GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 38577 0.67 0.584919
Target:  5'- -----cGCGUUGCC-GUcCGACGCGCu -3'
miRNA:   3'- uaagcaCGCGAUGGaCGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 23388 0.67 0.57389
Target:  5'- -gUCGUauugccgccuGCGCcGCCcggcacGUUCGGCGCGCc -3'
miRNA:   3'- uaAGCA----------CGCGaUGGa-----CGAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 12094 0.67 0.551987
Target:  5'- -gUCGU-CGCgGCCuggcaUGCgcagCGGCGCGCg -3'
miRNA:   3'- uaAGCAcGCGaUGG-----ACGa---GCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 12579 0.67 0.54113
Target:  5'- --cCGcGCGCcGCCggGCgcagUCGGCGCGCc -3'
miRNA:   3'- uaaGCaCGCGaUGGa-CG----AGCUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.