miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24130 5' -55.9 NC_005263.2 + 1054 0.66 0.614873
Target:  5'- uUUCGUgcgGCGCUugCgaggagGCUUGACggaagugccgaauuGCGCg -3'
miRNA:   3'- uAAGCA---CGCGAugGa-----CGAGCUG--------------CGCG- -5'
24130 5' -55.9 NC_005263.2 + 4477 0.66 0.607089
Target:  5'- --cCGUGCGCgcg--GgUCGGCGUGCu -3'
miRNA:   3'- uaaGCACGCGauggaCgAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 32983 0.66 0.607089
Target:  5'- cGUUUGcGCGCUGCgUaUUCG-CGCGCg -3'
miRNA:   3'- -UAAGCaCGCGAUGgAcGAGCuGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 29179 0.66 0.607089
Target:  5'- -cUCGaGCGCUcguGCCgcgcggucacGCUCGACGCa- -3'
miRNA:   3'- uaAGCaCGCGA---UGGa---------CGAGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 39117 0.66 0.607089
Target:  5'- -cUCGUGCGC--CgUGCgUCGGCGCu- -3'
miRNA:   3'- uaAGCACGCGauGgACG-AGCUGCGcg -5'
24130 5' -55.9 NC_005263.2 + 17758 0.66 0.607089
Target:  5'- --gCGgcaGCGCgGCCgcGCUCGgcACGCGCu -3'
miRNA:   3'- uaaGCa--CGCGaUGGa-CGAGC--UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 23915 0.66 0.607089
Target:  5'- -gUCGcGCGCaucGCUugguggcugaUGCUCGGCGgGCa -3'
miRNA:   3'- uaAGCaCGCGa--UGG----------ACGAGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 37951 0.66 0.607089
Target:  5'- ---gGUGCGCaACCgGC-CGAUGcCGCg -3'
miRNA:   3'- uaagCACGCGaUGGaCGaGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 37695 0.66 0.595988
Target:  5'- cGUUCGUugaacGCGCgccggACCcGCUCGccggccggcccgGCGCGUg -3'
miRNA:   3'- -UAAGCA-----CGCGa----UGGaCGAGC------------UGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 17890 0.66 0.595988
Target:  5'- -gUUGUGC-UUACCgUGaaCGGCGCGCa -3'
miRNA:   3'- uaAGCACGcGAUGG-ACgaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45824 0.66 0.595988
Target:  5'- --aCG-GCGCacgACCUGC-CGACG-GCg -3'
miRNA:   3'- uaaGCaCGCGa--UGGACGaGCUGCgCG- -5'
24130 5' -55.9 NC_005263.2 + 47690 0.66 0.595988
Target:  5'- -cUCGUGCuguGCggcaAgCUGCUCGGCaCGCu -3'
miRNA:   3'- uaAGCACG---CGa---UgGACGAGCUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 21581 0.66 0.595988
Target:  5'- --gCGUGCucGCcGCCgGCgUCGACGcCGCg -3'
miRNA:   3'- uaaGCACG--CGaUGGaCG-AGCUGC-GCG- -5'
24130 5' -55.9 NC_005263.2 + 18907 0.66 0.59488
Target:  5'- -----cGCGCcgGCCUGCgUCGAgcgugacCGCGCg -3'
miRNA:   3'- uaagcaCGCGa-UGGACG-AGCU-------GCGCG- -5'
24130 5' -55.9 NC_005263.2 + 45919 0.67 0.584919
Target:  5'- --aUGUGgGCgACCgaagGCUgGGCGCGUc -3'
miRNA:   3'- uaaGCACgCGaUGGa---CGAgCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 17650 0.67 0.584919
Target:  5'- -gUCG-GCGCUACg-GCaUCGACcCGCg -3'
miRNA:   3'- uaAGCaCGCGAUGgaCG-AGCUGcGCG- -5'
24130 5' -55.9 NC_005263.2 + 18849 0.67 0.584919
Target:  5'- cGUUCGaccGCGUgaacaacGCgUGcCUCGGCGCGCc -3'
miRNA:   3'- -UAAGCa--CGCGa------UGgAC-GAGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 38577 0.67 0.584919
Target:  5'- -----cGCGUUGCC-GUcCGACGCGCu -3'
miRNA:   3'- uaagcaCGCGAUGGaCGaGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 16804 0.67 0.57389
Target:  5'- -aUCGuUGCGaugaagGCUaGCgUCGACGCGCu -3'
miRNA:   3'- uaAGC-ACGCga----UGGaCG-AGCUGCGCG- -5'
24130 5' -55.9 NC_005263.2 + 3744 0.67 0.57389
Target:  5'- uUUCGaa-GUacGCCUGCUCG-CGCGCg -3'
miRNA:   3'- uAAGCacgCGa-UGGACGAGCuGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.