miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24131 3' -58.6 NC_005263.2 + 35315 0.66 0.551379
Target:  5'- gCUGuuGCUGugGGguuguUGAguUGUCCGGUa -3'
miRNA:   3'- gGACggCGGCugCC-----GCU--ACAGGCUAg -5'
24131 3' -58.6 NC_005263.2 + 29496 0.66 0.540897
Target:  5'- aCCUGCCgcgaacGCCGcuGCGGCGuccGUCgGcgCg -3'
miRNA:   3'- -GGACGG------CGGC--UGCCGCua-CAGgCuaG- -5'
24131 3' -58.6 NC_005263.2 + 24943 0.66 0.540897
Target:  5'- --gGCgGCgGACGGCGGUG-CgCGGUUc -3'
miRNA:   3'- ggaCGgCGgCUGCCGCUACaG-GCUAG- -5'
24131 3' -58.6 NC_005263.2 + 35231 0.66 0.539853
Target:  5'- gCUGUCGuuGuuCGGCGcgGUCgaccccuCGAUCa -3'
miRNA:   3'- gGACGGCggCu-GCCGCuaCAG-------GCUAG- -5'
24131 3' -58.6 NC_005263.2 + 18886 0.66 0.536723
Target:  5'- gCUGCgCGCCGACGGCaaauacgcgCCGGc- -3'
miRNA:   3'- gGACG-GCGGCUGCCGcuaca----GGCUag -5'
24131 3' -58.6 NC_005263.2 + 35770 0.66 0.530484
Target:  5'- aCUGCgGCUGGCGGCG-UG-CCa--- -3'
miRNA:   3'- gGACGgCGGCUGCCGCuACaGGcuag -5'
24131 3' -58.6 NC_005263.2 + 20993 0.66 0.527374
Target:  5'- gCCUGCgCGUCGACgugccggcguuucaGGCGAUcaUCCaGGUCg -3'
miRNA:   3'- -GGACG-GCGGCUG--------------CCGCUAc-AGG-CUAG- -5'
24131 3' -58.6 NC_005263.2 + 20781 0.66 0.509884
Target:  5'- --cGCCGCUGAucguCGGCGc-GUCgGGUCg -3'
miRNA:   3'- ggaCGGCGGCU----GCCGCuaCAGgCUAG- -5'
24131 3' -58.6 NC_005263.2 + 27615 0.66 0.508863
Target:  5'- aCgUGCgGCgCGACGGuCGAccacucaUGgCCGAUCg -3'
miRNA:   3'- -GgACGgCG-GCUGCC-GCU-------ACaGGCUAG- -5'
24131 3' -58.6 NC_005263.2 + 26189 0.66 0.49971
Target:  5'- gUCUGCgGCCGcGCGGCGg---CCGcgCg -3'
miRNA:   3'- -GGACGgCGGC-UGCCGCuacaGGCuaG- -5'
24131 3' -58.6 NC_005263.2 + 34367 0.66 0.49971
Target:  5'- gCCUgGCCGCCGGCGguaacgccGCGAgcacGUCgGAc- -3'
miRNA:   3'- -GGA-CGGCGGCUGC--------CGCUa---CAGgCUag -5'
24131 3' -58.6 NC_005263.2 + 34355 0.67 0.489627
Target:  5'- gCCUGUCGCCGuguaaacCGGCaGUGccCCGGUa -3'
miRNA:   3'- -GGACGGCGGCu------GCCGcUACa-GGCUAg -5'
24131 3' -58.6 NC_005263.2 + 22223 0.67 0.47964
Target:  5'- --gGCCGUCGcCGGCGucgGcCCGGUUg -3'
miRNA:   3'- ggaCGGCGGCuGCCGCua-CaGGCUAG- -5'
24131 3' -58.6 NC_005263.2 + 45697 0.67 0.465828
Target:  5'- gCUGCCGCUGuACGGCGAccaagcgaccgCCGGc- -3'
miRNA:   3'- gGACGGCGGC-UGCCGCUaca--------GGCUag -5'
24131 3' -58.6 NC_005263.2 + 37623 0.67 0.459972
Target:  5'- --aGCCGUCG-CGGuUGAUGUUCGaAUCa -3'
miRNA:   3'- ggaCGGCGGCuGCC-GCUACAGGC-UAG- -5'
24131 3' -58.6 NC_005263.2 + 26249 0.67 0.459972
Target:  5'- gCCgGCCGUCGcgaacGCGGCGAc--CUGAUCa -3'
miRNA:   3'- -GGaCGGCGGC-----UGCCGCUacaGGCUAG- -5'
24131 3' -58.6 NC_005263.2 + 8009 0.67 0.459
Target:  5'- uCUUGCCGCCGuCGauuuugaugucuuGCGAggcGUCCGcgCc -3'
miRNA:   3'- -GGACGGCGGCuGC-------------CGCUa--CAGGCuaG- -5'
24131 3' -58.6 NC_005263.2 + 23082 0.67 0.4503
Target:  5'- gCUGgCGCUGuuGGCGucGUUCGAUCa -3'
miRNA:   3'- gGACgGCGGCugCCGCuaCAGGCUAG- -5'
24131 3' -58.6 NC_005263.2 + 3189 0.67 0.4503
Target:  5'- aCUGCCGCUGcgcguCGGCGAgcgcggCCagGAUCg -3'
miRNA:   3'- gGACGGCGGCu----GCCGCUaca---GG--CUAG- -5'
24131 3' -58.6 NC_005263.2 + 8821 0.67 0.4503
Target:  5'- gCCUGCCgGCCGcuCGGCG---UgCGAUCa -3'
miRNA:   3'- -GGACGG-CGGCu-GCCGCuacAgGCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.